Merge branch 'smalton/DOR-294-5fC' into 'master'

DOR-294: Update modification tag Closes DOR-294 See merge request machine-learning/dorado!555
singagan · Aug 23, 2023 · b2e54b8 · b2e54b8
2 parents 354ad37 + bba206b
commit b2e54b8
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diff --git a/dorado/read_pipeline/ModBaseCallerNode.cpp b/dorado/read_pipeline/ModBaseCallerNode.cpp
@@ -266,7 +266,6 @@ void ModBaseCallerNode::modbasecall_worker_thread(size_t worker_id, size_t calle
         // We have just grabbed a number of chunks (0 in the case of timeout) from
         // the chunk queue and added them to batched_chunks.  Insert those chunks
         // into the model input tensors.
-        assert(!batched_chunks.empty());
         for (size_t chunk_idx = previous_chunk_count; chunk_idx < batched_chunks.size();
              ++chunk_idx) {
             assert(chunk_idx < m_batch_size);

diff --git a/dorado/read_pipeline/ReadPipeline.cpp b/dorado/read_pipeline/ReadPipeline.cpp
@@ -20,7 +20,7 @@ bool get_modbase_channel_name(std::string &channel_name, const std::string &mod_
                                                                         // C
                                                                         {"5mC", "m"},
                                                                         {"5hmC", "h"},
-                                                                        {"5fc", "f"},
+                                                                        {"5fC", "f"},
                                                                         {"5caC", "c"},
                                                                         // G
                                                                         {"8oxoG", "o"},