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1. gatk gatk Public

   Forked from broadgsa/gatk

   GATK Changes for TCGA Repository

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2. cgData cgData Public

   Forked from ucscCancer/cgData

   Python API to work with the cgData standard

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3. dx-ccle-fpkm dx-ccle-fpkm Public

   Forked from mlin/dx-ccle-fpkm

   DNAnexus platform applets to calculate expression levels from CCLE RNA-Seq data

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4. cramtools cramtools Public

   Forked from enasequence/cramtools

   Format specification and java implementation for next-gen data.

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5. bcftools bcftools Public

   Forked from samtools/bcftools

   This is the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib

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6. rnaseq_tutorial rnaseq_tutorial Public

   Forked from griffithlab/rnaseq_tutorial

   An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotat…

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