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Commits on Feb 18, 2019

• Fix compiler warnings

  fbreitwieser

  committed
  f5e899e

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• Remove unused variable

  fbreitwieser

  committed
  dade926

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• Use sparse parameter for HLL

  fbreitwieser

  committed
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Commits on Feb 16, 2019

• Enable resetting taxIDs and check for taxid mappings without AC version

  fbreitwieser

  committed
  606f2a8

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Commits on Feb 15, 2019

• Don't use khset for HLL (yet)

  fbreitwieser

  committed
  fea2a64

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• Use estimated k-mer count for database build

  fbreitwieser

  committed
  0a14f1d

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Commits on Feb 14, 2019

• Merge branch 'master' of https://github.com/fbreitwieser/krakenuniq

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  fbreitwieser

  committed
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Commits on Dec 31, 2018

• Fix build and running on OSX

  fbreitwieser

  committed
  02a8070

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Commits on Dec 27, 2018

• Eliminate warnings for memaccess.

  dnbaker

  committed
  746b7dd

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• Simplify for the purposes of compatibility with older compilers. (if initialization)

  dnbaker

  committed
  d2529f9

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• Return GPL3 and standard header guards to avoid #pragma once.

  dnbaker

  committed
  7f9c0c5

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• Replace std::unordered_set<uint32_t> with khset32_t.

  dnbaker

  committed
  6ea6f6c

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• Eliminate use of functor pointer so that hashing can be inlined.

  dnbaker

  committed
  31a36eb

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Commits on Dec 12, 2018

• Feature added: Setting LCAs hierarchically when building database

  fbreitwieser

  committed
  a8b4a2d

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• Build query_taxdb by default

  fbreitwieser

  committed
  8936227

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• Indentation and logging fixes

  fbreitwieser

  committed
  1640ea8

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• Updated query taxDB

  fbreitwieser

  committed
  9123fd1

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Commits on Dec 11, 2018

• Enable building with clang and without OpenMP on OSX

  fbreitwieser

  committed
  3760f20

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Commits on Dec 10, 2018

• Fix g++ v8 warnings on memset of non-trivial type

  fbreitwieser

  committed
  919175e

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Commits on Aug 28, 2018

• Don't use kraken namespace (fixes fbreitwieser#26)

  fbreitwieser

  committed
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Commits on Aug 22, 2018

• Fixed exact counting w/ the help of dnb

  fbreitwieser

  committed
  92de608

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Commits on Aug 10, 2018

• use khset by dnb for exact counting

  fbreitwieser

  committed
  5edd4cd

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Commits on Aug 8, 2018

• Project renamed to KrakenUniq

  fbreitwieser

  committed
  185a9f9

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Commits on Aug 6, 2018

• Implement exact counting w/ unordered set

  fbreitwieser

  committed
  f2243b6

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Commits on Jul 31, 2018

• Add exact counting of k-mers

  fbreitwieser

  committed
  4f5823d

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Commits on Jul 30, 2018

• Merge branch 'master' of https://github.com/fbreitwieser/krakenhll

  fbreitwieser

  committed
  77c1c87

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• Working on enabling exact unique counting

  fbreitwieser

  committed
  8068c7a

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• Add exact counting to count_unique

  fbreitwieser

  committed
  8dc7ea9

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Commits on Apr 4, 2018

• Refactor variable name

  fbreitwieser

  committed
  16e36c7

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Commits on Mar 30, 2018

• Remove krakenhll- prefix on scripts that are not put into path

  fbreitwieser

  committed
  52a6018

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Commits on Mar 16, 2018

• Throw errors with non-writeable files (fixes fbreitwieser#1)

  fbreitwieser

  committed
  0d08d6b

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• Check for equal k-mer sizes when using multiple databases

  fbreitwieser

  committed
  d96ef7b

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Commits on Mar 6, 2018

• Minor changes

  fbreitwieser

  committed
  d17b6a0

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Commits on Feb 26, 2018

• Don't add mouse sequence taxIDs

  fbreitwieser

  committed
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Commits on Feb 12, 2018

• Prepare to write full report

  fbreitwieser

  committed
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