Tags: snakemake/snakemake-wrappers
Tags
chore: release 5.5.2 (#3582) 🤖 I have created a release \*beep\* \*boop\* --- ### [5.5.2](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.1...v5.5.2) (2025-01-17) ### Performance Improvements * autobump bio/bbtools ([#3581](https://www.github.com/snakemake/snakemake-wrappers/issues/3581)) ([38301dd](https://www.github.com/snakemake/snakemake-wrappers/commit/38301dd4ed16465fab98221955f9564fd40cafa4)) * autobump bio/delly ([#3583](https://www.github.com/snakemake/snakemake-wrappers/issues/3583)) ([ea05ca4](https://www.github.com/snakemake/snakemake-wrappers/commit/ea05ca49c1f68ad91bf696d3d2424caf61191ae2)) * autobump bio/homer/annotatePeaks ([#3587](https://www.github.com/snakemake/snakemake-wrappers/issues/3587)) ([a42b7c5](https://www.github.com/snakemake/snakemake-wrappers/commit/a42b7c549c69b9270ac759c96d3aced77f48ee2b)) * autobump bio/homer/findPeaks ([#3589](https://www.github.com/snakemake/snakemake-wrappers/issues/3589)) ([070d08f](https://www.github.com/snakemake/snakemake-wrappers/commit/070d08f1ac2bb47d86b6308231fb171276f13f15)) * autobump bio/homer/getDifferentialPeaks ([#3588](https://www.github.com/snakemake/snakemake-wrappers/issues/3588)) ([8c1b169](https://www.github.com/snakemake/snakemake-wrappers/commit/8c1b1692c1b3752c1beaab3fb54ccc94187a22c5)) * autobump bio/homer/makeTagDirectory ([#3586](https://www.github.com/snakemake/snakemake-wrappers/issues/3586)) ([f888ec0](https://www.github.com/snakemake/snakemake-wrappers/commit/f888ec09c383ee024237bd765c8d7f056085d7fc)) * autobump bio/homer/mergePeaks ([#3585](https://www.github.com/snakemake/snakemake-wrappers/issues/3585)) ([6a4c189](https://www.github.com/snakemake/snakemake-wrappers/commit/6a4c18910e098fe596548f89d86506e3a660c67a)) * autobump bio/last/lastal ([#3591](https://www.github.com/snakemake/snakemake-wrappers/issues/3591)) ([56e8599](https://www.github.com/snakemake/snakemake-wrappers/commit/56e85998c37b3fe296041e0f087367042080f75e)) * autobump bio/last/lastdb ([#3590](https://www.github.com/snakemake/snakemake-wrappers/issues/3590)) ([e22bbb8](https://www.github.com/snakemake/snakemake-wrappers/commit/e22bbb83436692635cb6d63144a0cb230ac9e3e9)) * autobump bio/sourmash/compute ([#3592](https://www.github.com/snakemake/snakemake-wrappers/issues/3592)) ([f81c5ed](https://www.github.com/snakemake/snakemake-wrappers/commit/f81c5ed80ff9847395340585fa645e700d444c3b)) * autobump bio/varlociraptor/call-variants ([#3595](https://www.github.com/snakemake/snakemake-wrappers/issues/3595)) ([917ba7b](https://www.github.com/snakemake/snakemake-wrappers/commit/917ba7b6f2f3c50021a7aabc44e2b117b4f60d84)) * autobump bio/varlociraptor/control-fdr ([#3593](https://www.github.com/snakemake/snakemake-wrappers/issues/3593)) ([1e41c98](https://www.github.com/snakemake/snakemake-wrappers/commit/1e41c98b0432afee79f47df0f32046e407d8a782)) * autobump bio/varlociraptor/preprocess-variants ([#3594](https://www.github.com/snakemake/snakemake-wrappers/issues/3594)) ([49be17d](https://www.github.com/snakemake/snakemake-wrappers/commit/49be17d2cbbd9f73a2b9816746c608bef8ffcb52)) * autobump utils/datavzrd ([#3584](https://www.github.com/snakemake/snakemake-wrappers/issues/3584)) ([beceba8](https://www.github.com/snakemake/snakemake-wrappers/commit/beceba87adcd070617658b208797e334950c3791)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.5.1 (#3539) 🤖 I have created a release \*beep\* \*boop\* --- ### [5.5.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.5.0...v5.5.1) (2025-01-10) ### Performance Improvements * autobump bio/cutadapt/pe ([#3550](https://www.github.com/snakemake/snakemake-wrappers/issues/3550)) ([8dc7d5f](https://www.github.com/snakemake/snakemake-wrappers/commit/8dc7d5f7502a3303d1bcd5e12ade1a9490bed7f2)) * autobump bio/cutadapt/se ([#3549](https://www.github.com/snakemake/snakemake-wrappers/issues/3549)) ([fcb5a3d](https://www.github.com/snakemake/snakemake-wrappers/commit/fcb5a3df2d369a046b7a64704ef9e70599507c3e)) * autobump bio/dada2/add-species ([#3572](https://www.github.com/snakemake/snakemake-wrappers/issues/3572)) ([f80df41](https://www.github.com/snakemake/snakemake-wrappers/commit/f80df4197faad4a0e0b51b19fd3fba61aeb76927)) * autobump bio/dada2/assign-species ([#3567](https://www.github.com/snakemake/snakemake-wrappers/issues/3567)) ([b2b8aa6](https://www.github.com/snakemake/snakemake-wrappers/commit/b2b8aa6a371a20e4a67ff40de7b5db65094c5ab0)) * autobump bio/dada2/assign-taxonomy ([#3566](https://www.github.com/snakemake/snakemake-wrappers/issues/3566)) ([4a52888](https://www.github.com/snakemake/snakemake-wrappers/commit/4a52888f15f62d304006b5a75482b5601deb65ed)) * autobump bio/dada2/collapse-nomismatch ([#3561](https://www.github.com/snakemake/snakemake-wrappers/issues/3561)) ([7336f21](https://www.github.com/snakemake/snakemake-wrappers/commit/7336f210dc053734d48c0f59186f0898d4d0f505)) * autobump bio/dada2/dereplicate-fastq ([#3559](https://www.github.com/snakemake/snakemake-wrappers/issues/3559)) ([ff6ae97](https://www.github.com/snakemake/snakemake-wrappers/commit/ff6ae970d5a22ff421a58a10176de8c6f4748e2a)) * autobump bio/dada2/filter-trim ([#3564](https://www.github.com/snakemake/snakemake-wrappers/issues/3564)) ([7a44108](https://www.github.com/snakemake/snakemake-wrappers/commit/7a441087a9670cf37370f276b8d1ba09d7560b23)) * autobump bio/dada2/learn-errors ([#3562](https://www.github.com/snakemake/snakemake-wrappers/issues/3562)) ([cf4d4c5](https://www.github.com/snakemake/snakemake-wrappers/commit/cf4d4c53c2bfde673947b7f6e7e9a38b19f5a1b3)) * autobump bio/dada2/make-table ([#3560](https://www.github.com/snakemake/snakemake-wrappers/issues/3560)) ([ccceca5](https://www.github.com/snakemake/snakemake-wrappers/commit/ccceca5e26819cca359380eb9da1d6b79184cbcc)) * autobump bio/dada2/merge-pairs ([#3571](https://www.github.com/snakemake/snakemake-wrappers/issues/3571)) ([c3ce836](https://www.github.com/snakemake/snakemake-wrappers/commit/c3ce836fa45fc55de7f30fb533dfc050a6c1d168)) * autobump bio/dada2/quality-profile ([#3570](https://www.github.com/snakemake/snakemake-wrappers/issues/3570)) ([f6bec9b](https://www.github.com/snakemake/snakemake-wrappers/commit/f6bec9be5f567e4746f76d6d9507c44c1d52d40c)) * autobump bio/dada2/remove-chimeras ([#3563](https://www.github.com/snakemake/snakemake-wrappers/issues/3563)) ([469ae13](https://www.github.com/snakemake/snakemake-wrappers/commit/469ae1379f3ec450a88a64cfca11a55c05d98dfd)) * autobump bio/dada2/sample-inference ([#3565](https://www.github.com/snakemake/snakemake-wrappers/issues/3565)) ([6abbd40](https://www.github.com/snakemake/snakemake-wrappers/commit/6abbd40309657820b031942c1cf36c466b21bfde)) * autobump bio/delly ([#3578](https://www.github.com/snakemake/snakemake-wrappers/issues/3578)) ([6acdb27](https://www.github.com/snakemake/snakemake-wrappers/commit/6acdb2734dfcd00f3370e2ba805b476fb7c60f47)) * autobump bio/deseq2/deseqdataset ([#3568](https://www.github.com/snakemake/snakemake-wrappers/issues/3568)) ([89ad456](https://www.github.com/snakemake/snakemake-wrappers/commit/89ad4560298f4dc0b1a3e9e72ef1ffb597ed4aee)) * autobump bio/deseq2/wald ([#3569](https://www.github.com/snakemake/snakemake-wrappers/issues/3569)) ([c7d448e](https://www.github.com/snakemake/snakemake-wrappers/commit/c7d448edd69b57d7a5b9637e4cdcc9bf5c22e8f9)) * autobump bio/enhancedvolcano ([#3551](https://www.github.com/snakemake/snakemake-wrappers/issues/3551)) ([e9b05eb](https://www.github.com/snakemake/snakemake-wrappers/commit/e9b05eb7b54ce3223256fc5afb1ac1f08aedcf8a)) * autobump bio/freebayes ([#3579](https://www.github.com/snakemake/snakemake-wrappers/issues/3579)) ([793dbdb](https://www.github.com/snakemake/snakemake-wrappers/commit/793dbdba3e000e6eea3420bda8654ddb9ad0500a)) * autobump bio/gdc-api/bam-slicing ([#3540](https://www.github.com/snakemake/snakemake-wrappers/issues/3540)) ([be07804](https://www.github.com/snakemake/snakemake-wrappers/commit/be078043d1fcc41c0997f02b90827adde311ed34)) * autobump bio/hifiasm ([#3541](https://www.github.com/snakemake/snakemake-wrappers/issues/3541)) ([ac72153](https://www.github.com/snakemake/snakemake-wrappers/commit/ac72153e7731bb55b7b894d355a15575ba4a3eba)) * autobump bio/hifiasm ([#3552](https://www.github.com/snakemake/snakemake-wrappers/issues/3552)) ([78986be](https://www.github.com/snakemake/snakemake-wrappers/commit/78986becb0c434a5c6e275f96c5e3f884d5e376b)) * autobump bio/last/lastal ([#3554](https://www.github.com/snakemake/snakemake-wrappers/issues/3554)) ([ae1eef1](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1eef1a470fae8b9f9b90208dd7eb6b2221e6ea)) * autobump bio/last/lastdb ([#3553](https://www.github.com/snakemake/snakemake-wrappers/issues/3553)) ([783b6eb](https://www.github.com/snakemake/snakemake-wrappers/commit/783b6ebfd20061e3ff47a2c1a409b746b9cdf080)) * autobump bio/multiqc ([#3573](https://www.github.com/snakemake/snakemake-wrappers/issues/3573)) ([a5379bc](https://www.github.com/snakemake/snakemake-wrappers/commit/a5379bc4c08e83d3b66c408557e068074fb3bb8b)) * autobump bio/open-cravat/module ([#3556](https://www.github.com/snakemake/snakemake-wrappers/issues/3556)) ([478426e](https://www.github.com/snakemake/snakemake-wrappers/commit/478426e6be138a833ce61544fe14c6574b7cf92c)) * autobump bio/open-cravat/run ([#3555](https://www.github.com/snakemake/snakemake-wrappers/issues/3555)) ([e4057fb](https://www.github.com/snakemake/snakemake-wrappers/commit/e4057fbf8f8aaf269738f460340156abaed6e663)) * autobump bio/pbmm2/align ([#3557](https://www.github.com/snakemake/snakemake-wrappers/issues/3557)) ([237d150](https://www.github.com/snakemake/snakemake-wrappers/commit/237d1501cdc61dd7333b259f565018e690d36361)) * autobump bio/pbmm2/index ([#3558](https://www.github.com/snakemake/snakemake-wrappers/issues/3558)) ([7b6aa5c](https://www.github.com/snakemake/snakemake-wrappers/commit/7b6aa5ce164a4f1c45716ae9c56dbe6d330c08f3)) * autobump bio/pcaexplorer/pcaplot ([#3580](https://www.github.com/snakemake/snakemake-wrappers/issues/3580)) ([561ea6c](https://www.github.com/snakemake/snakemake-wrappers/commit/561ea6cfbfa73e34c8e191211ee6885fb0e4cd1d)) * autobump bio/sourmash/compute ([#3543](https://www.github.com/snakemake/snakemake-wrappers/issues/3543)) ([c8c8cdb](https://www.github.com/snakemake/snakemake-wrappers/commit/c8c8cdb6d667f703a7ebccd84c2145101ef77ca8)) * autobump bio/subread/featurecounts ([#3544](https://www.github.com/snakemake/snakemake-wrappers/issues/3544)) ([edfac80](https://www.github.com/snakemake/snakemake-wrappers/commit/edfac80c666adfd38742e425e5f8a64a523f36f9)) * autobump bio/tximport ([#3576](https://www.github.com/snakemake/snakemake-wrappers/issues/3576)) ([b41d72b](https://www.github.com/snakemake/snakemake-wrappers/commit/b41d72bc7abbea3e431e432b5fcc845d81ca48b6)) * autobump bio/varlociraptor/call-variants ([#3548](https://www.github.com/snakemake/snakemake-wrappers/issues/3548)) ([b18ec90](https://www.github.com/snakemake/snakemake-wrappers/commit/b18ec90d132ca7964aca7ba448eb3f6917cf6028)) * autobump bio/varlociraptor/control-fdr ([#3545](https://www.github.com/snakemake/snakemake-wrappers/issues/3545)) ([75fae1d](https://www.github.com/snakemake/snakemake-wrappers/commit/75fae1dfc1005b5089cc6a0f434545381755348b)) * autobump bio/varlociraptor/preprocess-variants ([#3547](https://www.github.com/snakemake/snakemake-wrappers/issues/3547)) ([48fa286](https://www.github.com/snakemake/snakemake-wrappers/commit/48fa286dfedb36323c0931972522114c084cbc4f)) * autobump bio/vsearch ([#3574](https://www.github.com/snakemake/snakemake-wrappers/issues/3574)) ([d451c9e](https://www.github.com/snakemake/snakemake-wrappers/commit/d451c9e438b0b9ebfac91e7912f294ae85fced1e)) * autobump utils/datavzrd ([#3538](https://www.github.com/snakemake/snakemake-wrappers/issues/3538)) ([0ed0bda](https://www.github.com/snakemake/snakemake-wrappers/commit/0ed0bda5ec4fc18fd16ffa0511abf59602db17ef)) * autobump utils/datavzrd ([#3577](https://www.github.com/snakemake/snakemake-wrappers/issues/3577)) ([a63bdf9](https://www.github.com/snakemake/snakemake-wrappers/commit/a63bdf9329b3a8140b0e61446275c1acd729bd81)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.5.0 (#3536) 🤖 I have created a release \*beep\* \*boop\* --- ## [5.5.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.4.0...v5.5.0) (2024-12-10) ### Features * NGSCheckMate ([#3498](https://www.github.com/snakemake/snakemake-wrappers/issues/3498)) ([df7fe5b](https://www.github.com/snakemake/snakemake-wrappers/commit/df7fe5bcb5fe737e4d4bd958caec4445ce1f6748)) ### Performance Improvements * Update datavzrd wrapper to latest yte version ([#3537](https://www.github.com/snakemake/snakemake-wrappers/issues/3537)) ([336079b](https://www.github.com/snakemake/snakemake-wrappers/commit/336079be7c46dad737227dd02bc6e3b498af87f5)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.4.0 (#3505) 🤖 I have created a release \*beep\* \*boop\* --- ## [5.4.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.3.0...v5.4.0) (2024-12-06) ### Features * NGS-bits SampleAncestry ([#3502](https://www.github.com/snakemake/snakemake-wrappers/issues/3502)) ([8600d44](https://www.github.com/snakemake/snakemake-wrappers/commit/8600d44e79ae4dafa181d3b06eed6e3db0c7a2df)) * NGS-bits SampleSimilarity ([#3500](https://www.github.com/snakemake/snakemake-wrappers/issues/3500)) ([710597c](https://www.github.com/snakemake/snakemake-wrappers/commit/710597cdc4e7f518d1fda2ec246bb6a7e0e29ba9)) * NGSCheckMate make pattern ([#3499](https://www.github.com/snakemake/snakemake-wrappers/issues/3499)) ([3b96cc1](https://www.github.com/snakemake/snakemake-wrappers/commit/3b96cc18b5a7ce8643fc3f8a492333d8f339e4c5)) * Sex.DetERRmine ([#3497](https://www.github.com/snakemake/snakemake-wrappers/issues/3497)) ([3919f2e](https://www.github.com/snakemake/snakemake-wrappers/commit/3919f2e4b6fae381cf92c921e6f17086819de345)) ### Performance Improvements * autobump bio/bbtools ([#3507](https://www.github.com/snakemake/snakemake-wrappers/issues/3507)) ([19d027d](https://www.github.com/snakemake/snakemake-wrappers/commit/19d027d176bfa5da7ec2d75b9222547b0fd2b919)) * autobump bio/busco ([#3506](https://www.github.com/snakemake/snakemake-wrappers/issues/3506)) ([aad4b56](https://www.github.com/snakemake/snakemake-wrappers/commit/aad4b56df0ca427a0a12dba67bcf0edef51d545b)) * autobump bio/busco ([#3519](https://www.github.com/snakemake/snakemake-wrappers/issues/3519)) ([6af2e11](https://www.github.com/snakemake/snakemake-wrappers/commit/6af2e11535a6407a0a60eaa18f7e15548e4a4a01)) * autobump bio/encode_fastq_downloader ([#3521](https://www.github.com/snakemake/snakemake-wrappers/issues/3521)) ([cbf06d2](https://www.github.com/snakemake/snakemake-wrappers/commit/cbf06d227d2cece579b1bdff413d09036e2d976f)) * autobump bio/freebayes ([#3509](https://www.github.com/snakemake/snakemake-wrappers/issues/3509)) ([12b8b3c](https://www.github.com/snakemake/snakemake-wrappers/commit/12b8b3ce9d5be65a2165b4ca3e0403935b950237)) * autobump bio/gatk3/baserecalibrator ([#3523](https://www.github.com/snakemake/snakemake-wrappers/issues/3523)) ([7a7518e](https://www.github.com/snakemake/snakemake-wrappers/commit/7a7518e63e0c6eac8d7cb935808b8692e4e688ff)) * autobump bio/gatk3/indelrealigner ([#3525](https://www.github.com/snakemake/snakemake-wrappers/issues/3525)) ([a0d913c](https://www.github.com/snakemake/snakemake-wrappers/commit/a0d913ce81ceb45aeff0eeee8e1e92e63bda786c)) * autobump bio/gatk3/printreads ([#3524](https://www.github.com/snakemake/snakemake-wrappers/issues/3524)) ([67af9a6](https://www.github.com/snakemake/snakemake-wrappers/commit/67af9a6899872a5e2e8cabc58572aa31d51a43cc)) * autobump bio/gatk3/realignertargetcreator ([#3522](https://www.github.com/snakemake/snakemake-wrappers/issues/3522)) ([5f8ffe7](https://www.github.com/snakemake/snakemake-wrappers/commit/5f8ffe7349ab24d55d45e1811519b2b9e9985068)) * autobump bio/hifiasm ([#3510](https://www.github.com/snakemake/snakemake-wrappers/issues/3510)) ([2b1b9f2](https://www.github.com/snakemake/snakemake-wrappers/commit/2b1b9f265231a3f3bc121dd9d4f34111b15d4486)) * autobump bio/mapdamage2 ([#3526](https://www.github.com/snakemake/snakemake-wrappers/issues/3526)) ([92da252](https://www.github.com/snakemake/snakemake-wrappers/commit/92da252bcafd05a0187b635b1938593aa4268c3b)) * autobump bio/mosdepth ([#3511](https://www.github.com/snakemake/snakemake-wrappers/issues/3511)) ([762b273](https://www.github.com/snakemake/snakemake-wrappers/commit/762b273800120519ffd2bc2f670ae93be6187cac)) * autobump bio/mtnucratio ([#3512](https://www.github.com/snakemake/snakemake-wrappers/issues/3512)) ([7f6a3b0](https://www.github.com/snakemake/snakemake-wrappers/commit/7f6a3b07cc2bae16fb30c097e783b70e87ad58f1)) * autobump bio/ngsbits/sampleancestry ([#3527](https://www.github.com/snakemake/snakemake-wrappers/issues/3527)) ([2abf38c](https://www.github.com/snakemake/snakemake-wrappers/commit/2abf38c30e541dd45563ee7ec3959ccf43802fab)) * autobump bio/ngsbits/samplesimilarity ([#3529](https://www.github.com/snakemake/snakemake-wrappers/issues/3529)) ([c91ce10](https://www.github.com/snakemake/snakemake-wrappers/commit/c91ce1075792f231d833a89298e88353c96973b1)) * autobump bio/ngscheckmate/makesnvpattern ([#3528](https://www.github.com/snakemake/snakemake-wrappers/issues/3528)) ([ff9a81d](https://www.github.com/snakemake/snakemake-wrappers/commit/ff9a81d923b8efc807f0054400d03c6277777cb8)) * autobump bio/reference/ensembl-mysql-table ([#3513](https://www.github.com/snakemake/snakemake-wrappers/issues/3513)) ([6b5c545](https://www.github.com/snakemake/snakemake-wrappers/commit/6b5c5454e86cfd393e5fa55b86566e60ef43dd5c)) * autobump bio/sexdeterrmine ([#3514](https://www.github.com/snakemake/snakemake-wrappers/issues/3514)) ([2b18309](https://www.github.com/snakemake/snakemake-wrappers/commit/2b183092fd31225462490d43df5916e678ea5f83)) * autobump bio/spades/metaspades ([#3530](https://www.github.com/snakemake/snakemake-wrappers/issues/3530)) ([070b9b6](https://www.github.com/snakemake/snakemake-wrappers/commit/070b9b62af3cc79f7a4fe1500963892631f8d752)) * autobump bio/varlociraptor/call-variants ([#3533](https://www.github.com/snakemake/snakemake-wrappers/issues/3533)) ([8c563f1](https://www.github.com/snakemake/snakemake-wrappers/commit/8c563f18f02f3f06760f2f25ad85383f9d776b2d)) * autobump bio/varlociraptor/control-fdr ([#3532](https://www.github.com/snakemake/snakemake-wrappers/issues/3532)) ([ce7d1b0](https://www.github.com/snakemake/snakemake-wrappers/commit/ce7d1b00bdf6a856ffe5ed6bac7258ca970cde4a)) * autobump bio/varlociraptor/estimate-alignment-properties ([#3531](https://www.github.com/snakemake/snakemake-wrappers/issues/3531)) ([0b5ac04](https://www.github.com/snakemake/snakemake-wrappers/commit/0b5ac04792bcd54984ea6b0e6af41efa33fba126)) * autobump bio/varlociraptor/preprocess-variants ([#3534](https://www.github.com/snakemake/snakemake-wrappers/issues/3534)) ([56a8933](https://www.github.com/snakemake/snakemake-wrappers/commit/56a8933de936e20e0068bd1d8cb6bbea3826f655)) * autobump bio/vep/annotate ([#3515](https://www.github.com/snakemake/snakemake-wrappers/issues/3515)) ([2609900](https://www.github.com/snakemake/snakemake-wrappers/commit/26099008485dbf5a8054f3284a1892dd1245ac8a)) * autobump bio/vep/cache ([#3516](https://www.github.com/snakemake/snakemake-wrappers/issues/3516)) ([f46427c](https://www.github.com/snakemake/snakemake-wrappers/commit/f46427c7951ad1a2ccd142b74698aac3009b2c66)) * autobump bio/vep/plugins ([#3535](https://www.github.com/snakemake/snakemake-wrappers/issues/3535)) ([9a6ccc3](https://www.github.com/snakemake/snakemake-wrappers/commit/9a6ccc34ce5db38c419076d7f707321bf69357dc)) * autobump bio/vg/giraffe ([#3517](https://www.github.com/snakemake/snakemake-wrappers/issues/3517)) ([6fffdd6](https://www.github.com/snakemake/snakemake-wrappers/commit/6fffdd6caec48f099b6140dd113a295f7202fa63)) * autobump utils/csvtk ([#3508](https://www.github.com/snakemake/snakemake-wrappers/issues/3508)) ([41e8545](https://www.github.com/snakemake/snakemake-wrappers/commit/41e8545b5663c91d6b13b5acd2c126a6b42a9a92)) * autobump utils/csvtk ([#3520](https://www.github.com/snakemake/snakemake-wrappers/issues/3520)) ([d4a52e5](https://www.github.com/snakemake/snakemake-wrappers/commit/d4a52e5e900aa16cad66ebbea1b22fb27d3709ea)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.3.0 (#3503) 🤖 I have created a release \*beep\* \*boop\* --- ## [5.3.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.2.1...v5.3.0) (2024-11-27) ### Features * Add vg giraffe ([#3302](https://www.github.com/snakemake/snakemake-wrappers/issues/3302)) ([fbf806d](https://www.github.com/snakemake/snakemake-wrappers/commit/fbf806d97336b23caa443b9063b0042e97712d28)) * MtNucRatioCalculator ([#3496](https://www.github.com/snakemake/snakemake-wrappers/issues/3496)) ([b221057](https://www.github.com/snakemake/snakemake-wrappers/commit/b2210576f75be6a90569b676688b476c4aaba7a8)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.2.1 (#3481) 🤖 I have created a release \*beep\* \*boop\* --- ### [5.2.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.2.0...v5.2.1) (2024-11-22) ### Performance Improvements * autobump bio/biobambam2/bamsormadup ([#3480](https://www.github.com/snakemake/snakemake-wrappers/issues/3480)) ([ebdc3f3](https://www.github.com/snakemake/snakemake-wrappers/commit/ebdc3f3184a2df3d3036240a94b9abcf8d9e55be)) * autobump bio/cnvkit/antitarget ([#3486](https://www.github.com/snakemake/snakemake-wrappers/issues/3486)) ([42b2c54](https://www.github.com/snakemake/snakemake-wrappers/commit/42b2c54c822a0766c5fc960c10f33880baaf8037)) * autobump bio/cnvkit/batch ([#3483](https://www.github.com/snakemake/snakemake-wrappers/issues/3483)) ([3fa9e55](https://www.github.com/snakemake/snakemake-wrappers/commit/3fa9e5583bd1d53316dd1c7943715e533c061ca4)) * autobump bio/cnvkit/call ([#3484](https://www.github.com/snakemake/snakemake-wrappers/issues/3484)) ([876f233](https://www.github.com/snakemake/snakemake-wrappers/commit/876f2337d2cbd453b7141238ec89a411e5af403e)) * autobump bio/cnvkit/diagram ([#3487](https://www.github.com/snakemake/snakemake-wrappers/issues/3487)) ([430bfd0](https://www.github.com/snakemake/snakemake-wrappers/commit/430bfd02431dbf0619d0884209fd2ff6c5a53297)) * autobump bio/cnvkit/export ([#3482](https://www.github.com/snakemake/snakemake-wrappers/issues/3482)) ([6880dc2](https://www.github.com/snakemake/snakemake-wrappers/commit/6880dc2a44aa4341186869c09f49e975d6f4297a)) * autobump bio/cnvkit/target ([#3485](https://www.github.com/snakemake/snakemake-wrappers/issues/3485)) ([6494174](https://www.github.com/snakemake/snakemake-wrappers/commit/6494174a761c805ea7202029a85cd98e0270cd5d)) * autobump bio/multiqc ([#3489](https://www.github.com/snakemake/snakemake-wrappers/issues/3489)) ([f7ff561](https://www.github.com/snakemake/snakemake-wrappers/commit/f7ff5616ce538ceb80229c72a4714e892d042998)) * autobump bio/picard/collectinsertsizemetrics ([#3490](https://www.github.com/snakemake/snakemake-wrappers/issues/3490)) ([589d4fd](https://www.github.com/snakemake/snakemake-wrappers/commit/589d4fd402e4b36ff4c9b435151fe2c1ed046c83)) * autobump bio/varlociraptor/call-variants ([#3495](https://www.github.com/snakemake/snakemake-wrappers/issues/3495)) ([8515079](https://www.github.com/snakemake/snakemake-wrappers/commit/8515079e43a22ded7a1de987026277476544a34f)) * autobump bio/varlociraptor/control-fdr ([#3492](https://www.github.com/snakemake/snakemake-wrappers/issues/3492)) ([bdae3b0](https://www.github.com/snakemake/snakemake-wrappers/commit/bdae3b01c816452471aefdcacb59abe993c250d9)) * autobump bio/varlociraptor/estimate-alignment-properties ([#3494](https://www.github.com/snakemake/snakemake-wrappers/issues/3494)) ([ca7f770](https://www.github.com/snakemake/snakemake-wrappers/commit/ca7f7708b4073f1761d50c57a08fba7b87dba0f5)) * autobump bio/varlociraptor/preprocess-variants ([#3491](https://www.github.com/snakemake/snakemake-wrappers/issues/3491)) ([16d7bbd](https://www.github.com/snakemake/snakemake-wrappers/commit/16d7bbd84830897e23019fa6e1140cb35f28c813)) * autobump bio/vep/cache ([#3475](https://www.github.com/snakemake/snakemake-wrappers/issues/3475)) ([af5bc47](https://www.github.com/snakemake/snakemake-wrappers/commit/af5bc477822b51f03b1235643013270246325c07)) * autobump bio/vg/autoindex ([#3493](https://www.github.com/snakemake/snakemake-wrappers/issues/3493)) ([56d958b](https://www.github.com/snakemake/snakemake-wrappers/commit/56d958b17f81df18633457afe4f6537ed9c5f12e)) * autobump utils/datavzrd ([#3488](https://www.github.com/snakemake/snakemake-wrappers/issues/3488)) ([b22b3e3](https://www.github.com/snakemake/snakemake-wrappers/commit/b22b3e38a45ec8d66999ab8fd25346609f176a34)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.2.0 (#3479) 🤖 I have created a release \*beep\* \*boop\* --- ## [5.2.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.1.0...v5.2.0) (2024-11-21) ### Features * varlociraptor wrappers ([#3478](https://www.github.com/snakemake/snakemake-wrappers/issues/3478)) ([b0fa9b7](https://www.github.com/snakemake/snakemake-wrappers/commit/b0fa9b7dacf46d54239b3000a5f42587f04e19dc)) ### Performance Improvements * autobump bio/cooltools/dots ([#3456](https://www.github.com/snakemake/snakemake-wrappers/issues/3456)) ([a97cdfc](https://www.github.com/snakemake/snakemake-wrappers/commit/a97cdfc2d66700877206de2d34088c85dfa4a638)) * autobump bio/cooltools/eigs_cis ([#3463](https://www.github.com/snakemake/snakemake-wrappers/issues/3463)) ([8f8607d](https://www.github.com/snakemake/snakemake-wrappers/commit/8f8607dc96158d82854e868c215cc75ed6f3ff14)) * autobump bio/cooltools/eigs_trans ([#3460](https://www.github.com/snakemake/snakemake-wrappers/issues/3460)) ([745bb7b](https://www.github.com/snakemake/snakemake-wrappers/commit/745bb7bef11895aa6d648a74c8bc8b0d5acae5a1)) * autobump bio/cooltools/expected_cis ([#3461](https://www.github.com/snakemake/snakemake-wrappers/issues/3461)) ([812e9a2](https://www.github.com/snakemake/snakemake-wrappers/commit/812e9a21582784b56a71035260dfa23e5749d972)) * autobump bio/cooltools/expected_trans ([#3455](https://www.github.com/snakemake/snakemake-wrappers/issues/3455)) ([e91030b](https://www.github.com/snakemake/snakemake-wrappers/commit/e91030b29be6e98910b4482c36b9e7760f3f5b86)) * autobump bio/cooltools/insulation ([#3458](https://www.github.com/snakemake/snakemake-wrappers/issues/3458)) ([4c38da3](https://www.github.com/snakemake/snakemake-wrappers/commit/4c38da3bfc3fc16ab91fc5320f22bee8ff6b8dba)) * autobump bio/cooltools/pileup ([#3462](https://www.github.com/snakemake/snakemake-wrappers/issues/3462)) ([7177ad2](https://www.github.com/snakemake/snakemake-wrappers/commit/7177ad292a12821208c6114a24115bf5f4dd193f)) * autobump bio/cooltools/saddle ([#3457](https://www.github.com/snakemake/snakemake-wrappers/issues/3457)) ([7fe906d](https://www.github.com/snakemake/snakemake-wrappers/commit/7fe906d7706dc50abc771f2cddf801b56401ebe1)) * autobump bio/fastp ([#3464](https://www.github.com/snakemake/snakemake-wrappers/issues/3464)) ([beb2060](https://www.github.com/snakemake/snakemake-wrappers/commit/beb20609d58d65c831572e30bb27faa65e4403eb)) * autobump bio/gseapy/gsea ([#3465](https://www.github.com/snakemake/snakemake-wrappers/issues/3465)) ([f8cd208](https://www.github.com/snakemake/snakemake-wrappers/commit/f8cd2084082ba140dab5eb4b3daca4bf17e23877)) * autobump bio/merqury ([#3413](https://www.github.com/snakemake/snakemake-wrappers/issues/3413)) ([70eb542](https://www.github.com/snakemake/snakemake-wrappers/commit/70eb5424fb0f977836fb50b98872fdc576ce4c1e)) * autobump bio/muscle ([#3466](https://www.github.com/snakemake/snakemake-wrappers/issues/3466)) ([7c89f75](https://www.github.com/snakemake/snakemake-wrappers/commit/7c89f75c54e5f370c357a7ab9c830d3001a224a3)) * autobump bio/quast ([#3467](https://www.github.com/snakemake/snakemake-wrappers/issues/3467)) ([4167757](https://www.github.com/snakemake/snakemake-wrappers/commit/4167757bf73e5deeb507be82c8e3cec6f2189ef8)) * autobump bio/taxonkit ([#3468](https://www.github.com/snakemake/snakemake-wrappers/issues/3468)) ([bee8a4b](https://www.github.com/snakemake/snakemake-wrappers/commit/bee8a4b7182a386eb3beb9ce34aec915bdd0fe3e)) * autobump bio/vep/annotate ([#3470](https://www.github.com/snakemake/snakemake-wrappers/issues/3470)) ([2332600](https://www.github.com/snakemake/snakemake-wrappers/commit/23326000ef4cb5e7947e5663580d3bc82576a712)) * autobump bio/vg/construct ([#3472](https://www.github.com/snakemake/snakemake-wrappers/issues/3472)) ([09986e1](https://www.github.com/snakemake/snakemake-wrappers/commit/09986e164c36f13cfe40c5737ceeec1c8102712d)) * autobump bio/vg/ids ([#3469](https://www.github.com/snakemake/snakemake-wrappers/issues/3469)) ([f9889f7](https://www.github.com/snakemake/snakemake-wrappers/commit/f9889f7bccf9c357ac4918ff377ddebb51466ed6)) * autobump bio/vg/kmers ([#3474](https://www.github.com/snakemake/snakemake-wrappers/issues/3474)) ([555b73a](https://www.github.com/snakemake/snakemake-wrappers/commit/555b73a92343ce7125665a2d5c437729feb13bf1)) * autobump bio/vg/merge ([#3473](https://www.github.com/snakemake/snakemake-wrappers/issues/3473)) ([61ae4e0](https://www.github.com/snakemake/snakemake-wrappers/commit/61ae4e078ca2e0231ca67d83a7126a658022941f)) * autobump bio/vg/prune ([#3471](https://www.github.com/snakemake/snakemake-wrappers/issues/3471)) ([421ae43](https://www.github.com/snakemake/snakemake-wrappers/commit/421ae437e005f35d25818e57927dfa1676a2dd01)) * autobump bio/vg/sim ([#3476](https://www.github.com/snakemake/snakemake-wrappers/issues/3476)) ([722f872](https://www.github.com/snakemake/snakemake-wrappers/commit/722f872d92e0a5003a141dda499df4ff8d8d9942)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.1.0 (#3454) 🤖 I have created a release \*beep\* \*boop\* --- ## [5.1.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.0.2...v5.1.0) (2024-11-14) ### Features * add vg autoindex giraffe ([#3452](https://www.github.com/snakemake/snakemake-wrappers/issues/3452)) ([01de466](https://www.github.com/snakemake/snakemake-wrappers/commit/01de466bb3c59b474f8274e8007ae80f57f518c0)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.0.2 (#3429) 🤖 I have created a release \*beep\* \*boop\* --- ### [5.0.2](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.0.1...v5.0.2) (2024-11-11) ### Bug Fixes * in seqkit wrapper, allow multiple inputs for stats ([#3430](https://www.github.com/snakemake/snakemake-wrappers/issues/3430)) ([65ed4ed](https://www.github.com/snakemake/snakemake-wrappers/commit/65ed4ed724958439c8cc1af505c36edd02a027ea)) ### Performance Improvements * autobump bio/bbtools ([#3434](https://www.github.com/snakemake/snakemake-wrappers/issues/3434)) ([dfa761d](https://www.github.com/snakemake/snakemake-wrappers/commit/dfa761d3c8fe44a3ae88bacf2e77b3031ef12ed3)) * autobump bio/bwa/mem ([#3433](https://www.github.com/snakemake/snakemake-wrappers/issues/3433)) ([943d1d4](https://www.github.com/snakemake/snakemake-wrappers/commit/943d1d41bb9f7555b9668dcd9468d6f3e2b33765)) * autobump bio/fgbio/annotatebamwithumis ([#3439](https://www.github.com/snakemake/snakemake-wrappers/issues/3439)) ([1b32c6a](https://www.github.com/snakemake/snakemake-wrappers/commit/1b32c6a14401922a22ba24048dd5e8203550a516)) * autobump bio/fgbio/callmolecularconsensusreads ([#3441](https://www.github.com/snakemake/snakemake-wrappers/issues/3441)) ([997e474](https://www.github.com/snakemake/snakemake-wrappers/commit/997e474b535a747180a63304fb817fc88aa7e6f5)) * autobump bio/fgbio/collectduplexseqmetrics ([#3442](https://www.github.com/snakemake/snakemake-wrappers/issues/3442)) ([a3134e7](https://www.github.com/snakemake/snakemake-wrappers/commit/a3134e7a66995f066d316f8f13f8a0fe9fbea975)) * autobump bio/fgbio/filterconsensusreads ([#3438](https://www.github.com/snakemake/snakemake-wrappers/issues/3438)) ([3dfceb7](https://www.github.com/snakemake/snakemake-wrappers/commit/3dfceb7f65a70e2a0bc69e5a25b2ef228c1dc232)) * autobump bio/fgbio/groupreadsbyumi ([#3440](https://www.github.com/snakemake/snakemake-wrappers/issues/3440)) ([6d5bdda](https://www.github.com/snakemake/snakemake-wrappers/commit/6d5bddabf3118e4425918cc0908f78b3c5ed5d24)) * autobump bio/fgbio/setmateinformation ([#3437](https://www.github.com/snakemake/snakemake-wrappers/issues/3437)) ([3014a61](https://www.github.com/snakemake/snakemake-wrappers/commit/3014a61029dee2d33e48ecb3163d4e62c2550b23)) * autobump bio/muscle ([#3443](https://www.github.com/snakemake/snakemake-wrappers/issues/3443)) ([8e4a88b](https://www.github.com/snakemake/snakemake-wrappers/commit/8e4a88bd46d7ff9468f3e5b726b18baebe8ae8a0)) * autobump bio/seqkit ([#3444](https://www.github.com/snakemake/snakemake-wrappers/issues/3444)) ([c918cad](https://www.github.com/snakemake/snakemake-wrappers/commit/c918cad62e241d2afc4d21eb25d84629c67de811)) * autobump bio/vg/construct ([#3448](https://www.github.com/snakemake/snakemake-wrappers/issues/3448)) ([5f48818](https://www.github.com/snakemake/snakemake-wrappers/commit/5f4881896cefe8846fb94896a59623d8d5b68229)) * autobump bio/vg/ids ([#3449](https://www.github.com/snakemake/snakemake-wrappers/issues/3449)) ([1cfad9a](https://www.github.com/snakemake/snakemake-wrappers/commit/1cfad9a9d7ae171794a399445334dddbab004755)) * autobump bio/vg/kmers ([#3446](https://www.github.com/snakemake/snakemake-wrappers/issues/3446)) ([a7e82db](https://www.github.com/snakemake/snakemake-wrappers/commit/a7e82db16ca9e9d5ecd649f9319f7fae8e2589ff)) * autobump bio/vg/merge ([#3445](https://www.github.com/snakemake/snakemake-wrappers/issues/3445)) ([179c910](https://www.github.com/snakemake/snakemake-wrappers/commit/179c910e970070c309e9d50a8391c4b46cbff56d)) * autobump bio/vg/prune ([#3450](https://www.github.com/snakemake/snakemake-wrappers/issues/3450)) ([6be07b6](https://www.github.com/snakemake/snakemake-wrappers/commit/6be07b6921588cf0df3f0082ff2741a6549e457a)) * autobump bio/vg/sim ([#3447](https://www.github.com/snakemake/snakemake-wrappers/issues/3447)) ([fc34542](https://www.github.com/snakemake/snakemake-wrappers/commit/fc34542b6fa5573e1ff6e0bb86cd5952ffceb784)) * autobump utils/csvtk ([#3435](https://www.github.com/snakemake/snakemake-wrappers/issues/3435)) ([b90e63f](https://www.github.com/snakemake/snakemake-wrappers/commit/b90e63f3dcea0478bb2d960601dffa0e62c40523)) * autobump utils/datavzrd ([#3436](https://www.github.com/snakemake/snakemake-wrappers/issues/3436)) ([1ccdea5](https://www.github.com/snakemake/snakemake-wrappers/commit/1ccdea5ebae7a184ded266a1d3d3c79566b55fe5)) * Update datavzrd wrapper ([#3428](https://www.github.com/snakemake/snakemake-wrappers/issues/3428)) ([34a454a](https://www.github.com/snakemake/snakemake-wrappers/commit/34a454a9b4e5e9adaf0ec222f77d7b0bf9fd578b)) * Update datavzrd wrapper ([#3431](https://www.github.com/snakemake/snakemake-wrappers/issues/3431)) ([0f16111](https://www.github.com/snakemake/snakemake-wrappers/commit/0f16111b7a646de879e2d3ba067be38e87b2fd2b)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
chore: release 5.0.1 (#3427) 🤖 I have created a release \*beep\* \*boop\* --- ### [5.0.1](https://www.github.com/snakemake/snakemake-wrappers/compare/v5.0.0...v5.0.1) (2024-11-05) ### Bug Fixes * fixed datavzrd environment pinning to include numpy, pandas and polars ([#3426](https://www.github.com/snakemake/snakemake-wrappers/issues/3426)) ([5d3b18b](https://www.github.com/snakemake/snakemake-wrappers/commit/5d3b18b00df067d4c42ca62d1a1cd481d48c6a77)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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