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Commits on Apr 18, 2012

• r115: added -I and -S to bwasw

  lh3

  committed
  cd81868

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Commits on Nov 24, 2011

• output the NM tag

  

  Heng Li

  committed
  b5170e0

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• reordering BWA-SW command-line prompt

  

  Heng Li

  committed
  9f84384

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• removed a useless bwa-sw CMD option

  

  Heng Li

  committed
  b17b657

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Commits on Nov 12, 2011

• bugfix: wrong mapping quality

  

  Heng Li

  committed
  fa8cfe5

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• proper mate information

  

  Heng Li

  committed
  b42910a

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Commits on Nov 7, 2011

• bwa-sw PE seems working (SAM is incorrect)

  

  Heng Li

  committed
  e06685d

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Commits on Nov 6, 2011

• mate rescue seems working (not MT)

  

  Heng Li

  committed
  c8c79ef

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• compute insert size distribution

  

  Heng Li

  committed
  17eaac5

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Commits on Nov 5, 2011

• bwasw: read and align two fastq at a time

  

  Heng Li

  committed
  06687a3

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Commits on Oct 24, 2011

• not segfault immediately; but buggy

  

  Heng Li

  committed
  29c3acf

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Commits on Oct 21, 2011

• changes to bwa-sw for the 64-bit support; unfinish

  

  Heng Li

  committed
  b3397a1

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Commits on Jan 14, 2011

• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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