MRG: update version of screed to >= 1.1,<2

[ctb]

Fixes #2394.

The main update in screed from 1.0.5 to 1.1 was dib-lab/screed#90, which closes an unclosed file handle.

This PR also puts an upper bound on the screed version.

[codecov]

Codecov Report

Merging #2415 (47f40a8) into latest (f328aa2) will increase coverage by 7.76%.
The diff coverage is n/a.

@@            Coverage Diff             @@
##           latest    #2415      +/-   ##
==========================================
+ Coverage   84.81%   92.58%   +7.76%     
==========================================
  Files         133      104      -29     
  Lines       14819    12025    -2794     
  Branches     2513     2513              
==========================================
- Hits        12569    11133    -1436     
+ Misses       1948      590    -1358     
  Partials      302      302              

Flag	Coverage Δ
python	92.58% <ø> (ø)
rust	?

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Impacted Files	Coverage Δ
src/core/src/lib.rs
src/core/src/storage.rs
src/core/src/cmd.rs
src/core/src/signature.rs
src/core/src/index/revindex.rs
src/core/src/errors.rs
src/core/src/ffi/mod.rs
src/core/src/index/sbt/mhbt.rs
src/core/src/ffi/cmd/compute.rs
src/core/src/encodings.rs
... and 19 more

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[luizirber]

For nix is likely not finding the new screed version due to

sourmash/flake.nix

Lines 30 to 32 in 1c8b165

	pypi-deps-db = {
	url = "github:DavHau/mach-nix/3.5.0";
	};

using an older version of the PyPI package index.

I have NixOS/nixpkgs#205878 open to add screed to nixpkgs, extracted from https://github.com/sourmash-bio/sourmash/pull/2393/files#diff-206b9ce276ab5971a2489d75eb1b12999d4bf3843b7988cbe8d687cfde61dea0R63 where Nix is using only deps from nixpkgs (and so no need to check PyPI updates), but both are not merged yet 🙃

[luizirber]

nix is going to fail because the latest there is screed 1.1.1, will open PR to update NixOS/nixpkgs#217269 updates it to 1.1.2

[luizirber]

screed versions are up-to-date enough for nix and conda-forge, so I think we can merge this

[ctb]

       > ERROR: Could not find a version that satisfies the requirement screed<2,>=1.1.2 (from sourmash) (from versions: none)
       > ERROR: No matching distribution found for screed<2,>=1.1.2