This is the repository of the implementation of NCBI Antimicrobial Resistance Gene Finder (AMRFinderPlus) on bifrost. AMRFinderPlus finds acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences.
NOTE: Please be aware that this is a draft. The component hasn't been tested and it doesn't work yet.
git clone https://github.com/ssi-dk/bifrost_amrfinderplus
cd bifrost_amrfinderplus
bash install.sh -i LOCAL
conda activate bifrost_amrfinderplus_vx.x.x
export BIFROST_INSTALL_DIR='/your/path/'
BIFROST_DB_KEY="/your/key/here/" python -m bifrost_amrfinderplus -h