R package for MetaboAnalyst

Here we address the global structure preservation by tSNE and UMAP

a simple vae and cvae from keras

A list of deep learning implementations in biology

A tool for removing doublets from single-cell RNA-seq data

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

Unix, R and python tools for genomics and data science

李宏毅《机器学习》笔记，在线阅读地址：https://datawhalechina.github.io/leeml-notes

Deep learning for single-cell transcript counts

Single RNA-seq data analysis with R (Finland, May, 2019)

Deep count autoencoder for denoising scRNA-seq data

Training and evaluating a variational autoencoder for pan-cancer gene expression data

TensorFlow Tutorial and Examples for Beginners with Latest APIs

Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcom…

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

Unsupervised clustering with (Gaussian mixture) VAEs