Tools to clean, transform, merge and reshape data

iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide sequences. iFeature is capable of calculating and extracting…

TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

The aim of this project is to determine a suitable conventional machine learning model using the ChEMBL dataset to predict bioactivity values of different compounds on a SARS-coronavirus replicase …

Prediction using Logistic Regression with 87% accuracy

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA allel…

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

Collection of R-apps for VisR software

Amino Acid Embedding Representation as Machine Learning Features

Using k-mers to call HLA alleles in RNA sequencing data

Mol2vec notebooks for use with Binder service

for YouTube Channel

Material for lecture at the EMBL Single Cell Course 2016

Collection of cell type reference datasets.

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis …

The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use the segmented carotid to extract Time-Activity-Curve from PE…

Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures

Clinically Reportable TCR repertoires

R toolkit for single cell genomics

Analysis of single cell RNA-seq data course

A quality control analysis tool for high throughput sequencing data

Construction of IHGV sequences from RNA-seq