Amica

Code for AMICA: Adaptive Mixture ICA with shared component

TO COMPILE WITH INTEL FORTRAN ON MAC

1. Install Intel Fortran compiler for Mac/Linux (free demo). See https://software.intel.com/en-us/intel-parallel-studio-xe

2. Compile MPICH2 setting environmental vars CC, CXX, FC, and F77 to icc and ifort. Set $FBIN to Intel Fortran bin directory.

   i) Download the mpich-3.2 code from: http://www.mpich.org/static/downloads/3.2/mpich-3.2.tar.gz

   ii) Compile mpich-3.2:

     $ cp /Users/$USER/downloads/mpich-3.2.tar.gz .   
     $ setenv CC $FBIN/icc
     $ setenv CXX $FBIN/icc
     $ setenv F77 $FBIN/ifort
     $ setenv FC $FBIN/ifort   
     $ tar xvf mpich-3.2.tar.gz   
     $ cd mpich-3.2   
     $ ./configure --prefix=/Users/$USER/mpich-3.2-install   
     $ make   
     $ make install
   

3. Compile Amica with the command:

     $ ~/mpich-3.2-install/bin/mpif90 -L/Users/$USER/mpich-3.2-install/lib/ -I/Users/$USER/mpich-3.2-install/include/ -qopenmp -mkl -static-intel -O3 -fpp -DMKL amica15.f90 funmod2.f90 -o amica15mac
   

4. Test:

   i) Download Sample EEG Data (Memorize.fdt and amicadefs.param) from: https://sccn.ucsd.edu/~jason/amica_web.html

   ii) Test binary:

     $ ./amica15mac ./amicadefs.param
   

TO COMPILE WITH INTEL FORTRAN ON WINDOWS

1. Install Intel Fortran compiler for Windows.

2. Install MPICH2 library (fmpich2.lib) for Windows.

3. In a cmd.exe windows: Run compilervars.bat with argument (e.g. intel64):

     > "c:\Program Files (x86)\Intel\Composer XE 2011 SP1\bin\compilervars.bat" intel64
   

4. Compile Amica with the command (/F sets the stack size):

     > ifort /Qopenmp /Qmkl /F2147483648 /DMKL /fpp  /O3 /exe:amica15mkl.exe funmod2.f90 amica15.f90 fmpich2.lib
   

5. Test:

     > .\amica15mkl.exe .\amicadefs.param
   

TO COMPILE WITH INTEL FORTRAN ON UBUNTU

1. Install Intel Fortran compiler for Linux.

2. Compile MPICH2 setting environmental vars CC, CXX, FC, and F77 to icc and ifort.

3. Compile Amica with the command:

     $ /home/jason/mpich2-3.2-install/bin/mpif90 -I/opt/intel/mkl/include/ -fpp -qopenmp -O3 -mkl -static -static-intel -DMKL funmod2.f90 amica15.f90 -o amica15ub
   

4. Test:

     $ ./amica15ub ./amicadefs.param