Smoove (#79)

* don't filter smoove * smoove bug * yolo2 * further smoove fix * rawrec * duplicate definitions in smoove and lumpy * add IUPAC letters to BND parsing
talkowski-lab · Sep 24, 2018 · c1e3ef8 · c1e3ef8
1 parent 804d7b5
commit c1e3ef8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/svtk/standardize/standardize.py b/svtk/standardize/standardize.py
@@ -273,7 +273,7 @@ def parse_bnd_pos(alt):
     chrom : str
     pos : int
     """
-    alt = alt.strip('ATCGN')
+    alt = alt.strip('ATCGNRYSWKMBDHV')
     # Strip brackets separately, otherwise GL contigs will be altered
     alt = alt.strip('[]')