lpj-guess data

tarinzin · Aug 12, 2016 · ee00732 · ee00732
1 parent 07a280c
commit ee00732
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Showing 3 changed files with 14 additions and 2 deletions.
diff --git a/scripts/add.data.sh b/scripts/add.data.sh
@@ -16,13 +16,17 @@ DALEC="$DATADIR/dalec_EnKF_pub/input_data"
 ED_INPUT="$DATADIR/ed_inputs"
 FAO_INPUT="$DATADIR/faoOLD"
 OGE2_INPUT="$DATADIR/oge2OLD"
+LPJ_GUESS="$DATADIR/lpj-guess"
 
 # ED inputs
 addInputFile "${FQDN}" "294" "" "${ED_INPUT}/glu"
 addInputFile "${FQDN}" "295" "" "${ED_INPUT}"
 addInputFile "${FQDN}" "297" "FAO_" "${FAO_INPUT}"
 addInputFile "${FQDN}" "296" "OGE2_" "${OGE2_INPUT}"
 
+# LPJ-GUESS inputs
+addInputFile "${FQDN}" "1000000903" "cru_1901_2006.bin" "${LPJ_GUESS}"
+
 # [76] EBIFARM
 addInputFile "${FQDN}" "7" "ED_MET_DRIVER_HEADER" "${SITES}/ebifarm"
 addInputFile "${FQDN}" "6" "ebifarm.lat40.0lon-88.0.css" "${SITES}/ebifarm"

diff --git a/scripts/install_pecan.sh b/scripts/install_pecan.sh
@@ -470,6 +470,13 @@ if [ ! -e ${HOME}/inputs ]; then
   rm inputs.tgz
 fi
 
+if [ ! -e ${HOME}/lpj-guess/cru_1901_2006.bin ]; then
+  if [ ! -d ${HOME}/lpj-guess ]; then
+    mkdir ${HOME}/lpj-guess
+  fi
+  curl -s -o ${HOME}/lpj-guess/cru_1901_2006.bin http://isda.ncsa.illinois.edu/~kooper/PEcAn/data/cru_1901_2006.bin
+fi
+
 if [ ! -e ${HOME}/plot ]; then
   curl -s -o plot.tgz http://isda.ncsa.illinois.edu/~kooper/EBI/plot.tgz
   tar zxf plot.tgz

diff --git a/scripts/load.bety.sh b/scripts/load.bety.sh
@@ -177,16 +177,17 @@ PG_OPT="${PG_OPT} -v ON_ERROR_ROLLBACK=on"
 EMPTY_TABLES="formats machines mimetypes users"
 
 # list of all tables, schema_migrations is ignored since that
-# will be imported during creaton
+# will be imported during creaton. Order is semi important.
 CLEAN_TABLES="benchmark_sets benchmarks"
-CLEAN_TABLES="${CLEAN_TABLES} citations covariates cultivars dbfiles"
+CLEAN_TABLES="${CLEAN_TABLES} citations covariates cultivars"
 CLEAN_TABLES="${CLEAN_TABLES} ensembles entities formats inputs"
 CLEAN_TABLES="${CLEAN_TABLES} likelihoods machines managements metrics"
 CLEAN_TABLES="${CLEAN_TABLES} methods mimetypes models modeltypes"
 CLEAN_TABLES="${CLEAN_TABLES} pfts posteriors priors reference_runs"
 CLEAN_TABLES="${CLEAN_TABLES} runs sites species treatments"
 CLEAN_TABLES="${CLEAN_TABLES} variables workflows"
 CLEAN_TABLES="${CLEAN_TABLES} projects sitegroups"
+CLEAN_TABLES="${CLEAN_TABLES} dbfiles"
 
 # tables that have checks that need to be looked at.
 CHECK_TABLES="traits yields"