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Commits on Feb 3, 2023

• Merge pull request hoelzer-lab#210 from hoelzer-lab/fix_refac_reportingtools_table_invalid_ens_id

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• correctly derive comparison string from deseq2 output

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• add error message for unknow species not 'hsa' or 'mmu'

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• fix typo in error message

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Commits on Feb 2, 2023

• fix indexing in pos_part

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• fix script crashing when non-ENS ids are used and feature_type is not 'gene'

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• remove print

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• stop ensembl id lookup and return message if ID is not valid ens ID

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• remove print statements

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Commits on Feb 1, 2023

• Merge pull request hoelzer-lab#208 from hoelzer-lab/fix_deseq2_warnings, closes hoelzer-lab#202

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• Merge pull request hoelzer-lab#207 from hoelzer-lab/update_conda_profile

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• fix pca - dont use quotes in aes()

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Commits on Jan 31, 2023

• add conda.enable to ara, conda and standard profiles

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Commits on Jan 30, 2023

• replace row.names and col.names parameter in write.xlsx function

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• replace deprecated row/col.names function

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• explicitly enable conda in conda profile folloeing nextflow >= v22.07 convention

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Commits on Aug 22, 2022

• Merge pull request hoelzer-lab#200 from hoelzer-lab/dge_docs_update

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• add code formatting

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• update DGE result documentation

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Commits on Aug 11, 2022

• Merge pull request hoelzer-lab#196 from hoelzer-lab/webgestalt-empty-input

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• Merge pull request hoelzer-lab#195 from hoelzer-lab/fix_featurecounts_paired

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• fix typo

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• make webgestalt output optional

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Commits on Aug 9, 2022

• Merge pull request hoelzer-lab#174 from hoelzer-lab/cloud-compatible

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• Merge pull request hoelzer-lab#188 from hoelzer-lab/fix_anno_feature_type

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• Merge branch 'master' into cloud-compatible

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• Merge pull request hoelzer-lab#181 from hoelzer-lab/strand_priority

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• retrieve strandedness via meta dict instead of param.strand

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Commits on Aug 8, 2022

• Merge pull request hoelzer-lab#193 from hoelzer-lab/fix_channel_order_webgestalt

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Commits on Jul 18, 2022

• fix channel order in expression_reference_based sub wf

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Commits on Jun 20, 2022

• Merge pull request hoelzer-lab#189 from hoelzer-lab/fix_deseq_bad_char

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• Merge pull request hoelzer-lab#180 from hoelzer-lab/fix_source_col

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• Merge pull request hoelzer-lab#172 from hoelzer-lab/UpSetR

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• Merge pull request hoelzer-lab#171 from hoelzer-lab/setup

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• Merge pull request hoelzer-lab#170 from hoelzer-lab/fix_report_section_order

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