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Commits on Apr 30, 2018

• respect number of pcs even for fallback

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Commits on Apr 26, 2018

• added a threshold parameter to pl.paga

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• Merge pull request scverse#133 from dawe/master

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• added forceatlas2 layout to draw_graph

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Commits on Apr 25, 2018

• fixed bug in reexport

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  12f9caa

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• prettified pypairs

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• added reexport for mnn_concatenate

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• moved mnn_concatenate to rtools

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• removed the just introduced rpy2 from requirements

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• Merge pull request scverse#125 from chriscainx/master

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• Merge pull request scverse#130 from theislab/rna_velocity

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Commits on Apr 23, 2018

• summarized notebook state in velocity module

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• clean up rna velocity trials

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Commits on Apr 20, 2018

• further towards RNA velocity

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Commits on Apr 19, 2018

• further steps towards rna velocity

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• drafted rna velocity for paga

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• raise error when calling normalize_per_cell with array and copy=False

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• draft or rna_velocity

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• introduced gene_symbols parameter in rank_genes_groups

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Commits on Apr 18, 2018

• local import of pypairs and check whether it's installed

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• Merge pull request scverse#126 from rfechtner/include-pypairs

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• use dense distance matrix when knn is False

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• properly exploit categorical data in regress_out

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• added sanitize anndata for regress out

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Commits on Apr 16, 2018

• raise error when using an invalid category for reclustering

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• updated setup to contain versioneer cmdclass and display proper version numbers again

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• set _sdist to versioneer

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• added statsmodels to conda install

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• Merge pull request scverse#124 from gokceneraslan/patch-4

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Commits on Apr 11, 2018

• clarified UMAP docs

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Commits on Apr 10, 2018

• added more extensive explanation on diffusion maps

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Commits on Apr 9, 2018

• fix paga auxiliary functions

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• fixed bug just introduced for dense matrices

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• fix array shape bug for neighbors method=='gauss' and large matries

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• added a few additional colors and a check for that these are used

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