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  • nonuniform_coverage_pipeline Public

    Python Updated Dec 16, 2024

  • ribo_remover Public

    Tool to remove ribosomal reads from fastq files using BLAST

    Python Updated Nov 21, 2024

  • dependent_sim Public

    Generating Correlated Data for Omics Simulation

    R Other Updated Sep 18, 2024

  • alpine Public

    Forked from mikelove/alpine

    Modeling and correcting fragment sequence bias for RNA-seq

    R Updated Jun 4, 2024

  • tgbrooks.github.io Public

    GitHub Pages website

    HTML Updated Apr 23, 2024

  • param_pca Public

    Parameterized PCA regression

    Python 1 Updated Feb 2, 2024

  • BEERS2_optimize Public

    Pipeline to optimize configuration parameters for BEERS2 to mimic a real dataset

    Python 1 MIT License Updated Dec 15, 2023

  • BEERS2_salmon_benchmark Public

    Benchmark of Salmon bias correction using BEERS2

    Python Updated Dec 14, 2023

  • ukbb Public

    UK Biobank Temperature Biorhythm Anlaysis

    Jupyter Notebook 2 MIT License Updated Oct 6, 2023

  • circadian_comparison Public

    Comparison of circadian timeseries data across multiple studies

    Python MIT License Updated Oct 5, 2023

  • lsf Public

    Forked from Snakemake-Profiles/lsf

    Snakemake profile for running jobs on an LSF cluster

    Python MIT License Updated Aug 10, 2023

  • biobankAccelerometerAnalysis Public

    Fork of activityMonitoring/biobankAccelerometerAnalysis

    Python 2 Other Updated Jul 20, 2023

  • plean Public

    Plean is a Python implementation of the type system behind the Lean programming language / theorem prover.

    Python 1 Updated Jan 15, 2023

  • circadian_correlations Public

    Python Updated Jan 9, 2023

  • statsmodels Public

    Forked from statsmodels/statsmodels

    Statsmodels: statistical modeling and econometrics in Python

    Python BSD 3-Clause "New" or "Revised" License Updated Sep 29, 2021