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  • spl-indications-bart Public

    Use BART pre-trained model to predict indications from structured product labels (SPLs)

    Jupyter Notebook Updated Dec 8, 2022

  • chembl_ident Public

    ChEMBL identifier object that combines ChEMBL ID, MolRegNo and Drugbase ID. Useful because no single identifier covers all compounds in ChEMBL and Drugbase. Accessory functions are packaged to fill…

    Python Updated Jun 25, 2021

  • chembl_grounder Public

    Grounding of a DailyMed ingredient (with a UNII and a name) to ChEMBL using G-SRS to fetch names and structures for a UNII. These are matched to ChEMBL using query indexes.

    Python Updated Jun 24, 2021

  • ontology_index Public

    Allows parsing and saving of EFO and MeSH ontologies to BSDDB, and SPARQL querying using `rdflib`. For finding related entities within the ontologies (either by measuring distance between multiple …

    Python Updated May 28, 2021

  • inchicompare Public

    A few functions for splitting, normalising and comparing InChi strings. Detects exact matches by InChi layer which is useful for detecting ions and stereoisomers. Can split a mixture InChi into sin…

    Python Updated Sep 16, 2020

  • spl-indications-bert-ner Public

    Attempt at using BERT finetuned to an NER task for extracting the diseases that a drug is authorised to treat from drug labels

    Jupyter Notebook Updated May 29, 2020

  • tqdm Public

    Forked from tqdm/tqdm

    A Fast, Extensible Progress Bar for Python and CLI

    Python Other Updated May 4, 2020

  • text_query Public

    A few functions for parsing XML, creating varients of sentences and querying them with an index.

    Python Updated Feb 14, 2020

  • indications_curation Public

    Python Updated Jan 30, 2020

  • group_matches Public

    Python Updated Jan 15, 2020

  • tractability_pipeline Public

    Forked from chembl/tractability_pipeline

    Python pipeline for assessing the tractability of a set targets starting from Gene IDs

    Python MIT License Updated Sep 18, 2019

  • homebrew-core Public

    Forked from Homebrew/homebrew-core

    🍻 Default formulae for the missing package manager for macOS

    Ruby BSD 2-Clause "Simplified" License Updated Aug 27, 2019

  • python-rocksdb Public

    Forked from twmht/python-rocksdb

    Python bindings for RocksDB

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 19, 2019

  • package_demo Public

    Just a test

    Python Updated Apr 5, 2019