dna_to_godel.ipynb

Converting a DNA sequence to godel signal

Instructions

• Install Jypyter Notebook (https://jupyter.org/install)
• Run the first cell of .ipynb to install the required packages (biopython, numpy, pandas)
• k-value is specified in the third cell
• input is specified in the 11th cell
• Run each cell separately
• Good luck

presence_absence_matrices.ipynb

Creating data matrices with k-mer based features.

Instructions

• Install Jypyter Notebook (https://jupyter.org/install)
• Run the first cell of .ipynb to install the required packages (pandas,psutil)
• k-value is specified in the third cell
• input is specified in the 6th cell
• Run each cell separately
• Good luck