The Rosetta Bio-macromolecule modeling package.
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Nov 12, 2024 - C++
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antibody-design
Here are 18 public repositories matching this topic...
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
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Apr 18, 2024 - Python
This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
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Apr 7, 2023 - Python
Improved antibody structure-based design using inverse folding
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Dec 6, 2024 - Python
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
log-likelihood graph-neural-networks diffusion-models binding-affinity in-silico-design generative-ai antibody-design llm-models
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Oct 25, 2024 - Python
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
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Jun 17, 2024 - Python
An antibody-specific language model focusing on NGL prediction
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Jun 4, 2024 - Python
A Collection of Platform, Tools, and Resources for Antibody Engineering
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Jun 30, 2023 - Python
The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
transformer attention antibody patent-data antibody-sequence contrastive-learning immunogenicity-prediction humanness antibody-design
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Feb 14, 2024 - Python
PD-1 Targeted Antibody Discovery Using AI Protein Diffusion
data-science bioinformatics ai cancer protein-structure computational-biology high-performance-computing drug-discovery antibody drug-design oncology pd-1 protein-docking antibody-design protien-folding protein-diffusion evodiff
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Sep 4, 2024 - Shell
An unofficial re-implementation of DiffAb, a diffusion-based generative model for antigen-specific antibody design and optimization.
bioinformatics protein-structure computational-biology protein antibody diffusion diffusion-models protein-structure-generation antibody-design
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Aug 30, 2023 - Python
Protein structure handling in Python made easy.
bioinformatics protein-structure computational-biology pytorch protein antibody protein-design data-handling bioinformatics-tool protein-structure-analysis protein-structure-generation antibody-design
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Aug 30, 2023 - HTML
Gradient guided discrete walk-jump sampling
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May 23, 2024 - Python
Characterizing Broadly Neutralizing Antibody Maturation Pathways Using Reinforcement Learning
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Feb 15, 2024 - Python
Code for Opponent Shaping for Antibody Development
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Sep 24, 2024 - Python
DeepBioLab is an AI-focused platform designed to explore, build, and share advanced AI algorithms. It features educational content, projects, and research on topics like deep learning, reinforcement learning, and more. Dive into algorithms, develop from scratch, and discover solutions to science problems.
machine-learning reinforcement-learning ai deep-learning ai-for-science antibody-design bioprocess-development
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Oct 25, 2024 - HTML
This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 6, 284 (2023).
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Sep 7, 2023 - Jupyter Notebook
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