BSR-Based Allele Calling Algorithm
Making whole bacterial genome sequencing data analysis easy
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
AMR/VF LGT focused bacterial genomics analysis workflow
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
Genomewide Epistasis Analysis on Bacteria
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
A tool to detect acquired AMR genes directly from long read sequencing data.
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
A high-performance data pipeline built with Python and DuckDB for processing and analyzing Human Microbiome Project (HMP) bacterial genome data. Features include automated GenBank file processing, Prefect workflow orchestration, an interactive Streamlit dashboard for data exploration, and comprehensive test coverage. Perfect for bio researchers.
Reproducible and comprehensive sequence analyses for single-species bacterial dataset
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
Bacterial plasmid annotation pipeline
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