Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
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Updated
Feb 19, 2025 - Nextflow
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
A guide to using a Seurat object in conjunction with RNA Velocity
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
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