LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
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Nov 24, 2022 - R
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colocalization
Here are 22 public repositories matching this topic...
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
visualization data-science bioinformatics gwas genomics genetics julia julia-language multivariate qtl linkage openmendel phewas colocalization locuszoom fine-mapping makie v2f cairomakie multi-ethnic
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Jun 15, 2024 - Julia
Colocalization analysis of genetic association signals
bioinformatics integrative-analysis bioinformatics-analysis colocalization genetic-association-analysis
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Nov 26, 2024 - C++
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
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Jan 20, 2023 - R
An R package for conducting co-localization analysis. Edit
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Jan 4, 2020 - R
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
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Dec 23, 2022 - R
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
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Oct 21, 2023 - R
An automated tool for Object-based colocalization in fluorescence microscopy images.
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Sep 22, 2023 - Python
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
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Jan 25, 2021
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
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Jun 29, 2024 - Python
Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"
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Oct 20, 2021 - R
This is a fork from qqman package
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Aug 3, 2021 - R
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
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Dec 11, 2017 - C++
Image processing desktop GUI tool to automate colocalization analysis across multiple channels on a fluorescence image
machine-learning pyqt5 image-processing desktop image-recognition immunohistochemical-images kmeans-clustering colocalization immunohistochemistry
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Oct 29, 2021 - Python
Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)
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May 7, 2019 - R
Methylation and mqtl analysis of the developing knee
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Aug 7, 2024 - R
Colocalization analysis of Meconium Ileus Genome-Wide Association Study (GWAS) (Gong et al., 2019) signal around SLC26A9 with spirometry association analysis in the UK Biobank and Spirometa Consortium (Shrine et., 2019) around the same region to elucidate whether there is a shared genetic contribution to disease
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Dec 24, 2021 - HTML
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
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Nov 20, 2017 - Python
Colocalization metrics and distances for images or their sparse representations.
metrics julia-language image-processing interaction distance-measures microscopy colocalization single-molecule-imaging colocalisation
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Dec 11, 2024 - Julia
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Aug 6, 2018 - Jupyter Notebook
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