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Updated
Dec 14, 2023
#
concatination
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Used libraries and functions as follows:
python classifier numpy eda pandas seaborn logistic-regression confusion-matrix roc-curve linear-models logistic-regression-algorithm logit-model matplotlib-pyplot one-hot-encoding roc-auc-score concatination
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Sep 17, 2022 - Jupyter Notebook
This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta
bioinformatics supermatrix phylogenetics comparative-genomics comparative-genomics-studies phylogeny whole-genome-sequencing whole-genome evolutionary-biology concatination bacterial-genomics
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Updated
Mar 31, 2025 - Python
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