Wiki of CyVerseUK project. Tutorials and overview of technologies.

Renseq Pacbio pipeline

A static webpage repository where the Warwick CyVerse UK team publish announcements such as workshops and tutorials.

Dockerized Agave app for Polymarker, a SNP assay development pipeline

base templates for Dockerfile and wrappers

polymarker image with wheat genome

MrBayes app w/docker & mpi

Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.

Beast 2 agave & docker package

blast docker image and cyverse integration

RAxML agave app and docker image

portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis

Dockerized Agave app for GWASSER, an R script for simple gwassing.