navigate - open source light-sheet microscope controls
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Dec 17, 2024 - Python
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light-sheet-microcopy
Here are 15 public repositories matching this topic...
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
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Dec 11, 2024 - MATLAB
Vectorial ray tracing software for light-sheet microscopes
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Dec 14, 2023 - Python
A fully open-source system for prospective optical gating in 3D fluorescence light sheet cardiac imaging
raspberry-pi open-hardware microscopy picamera light-sheet-microcopy optical-gating in-vivo-imaging sample-motion
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Dec 7, 2023 - Python
Crown-like Structure Detection and Segmentation in 3D Light-sheet Microscopy Imaging with Mask R-CNN
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Aug 9, 2021 - Python
Measuring laser intensity underwater in a sample chamber with an open-hardware solution
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Jun 26, 2020 - Python
Stripe artifacts elimination of LSFM images using deep learning method
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Oct 19, 2022 - Python
Python toolkit for 2D/3D image processing using CPU or GPU
python gpu registration microscopy deconvolution single-molecule-imaging light-sheet-microcopy single-particle-tracking
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Apr 4, 2024 - Python
Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms
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Apr 5, 2021 - MATLAB
Collection of scripts for running data processing of light sheet data
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May 21, 2019 - Julia
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
python r velocity rna single-cell bone seurat light-sheet-microcopy pseudocolor rna-velocity cartilage stem-cells cellchat
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Aug 18, 2023 - Jupyter Notebook
Python code for merging and refinement of detected neurons in large 3D stacks
deep-learning convolutional-neural-networks cell-detection peak-detection light-sheet-microcopy mesospim 3d-microscopy
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Dec 9, 2023 - Python
Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.
microscopy super-resolution x-ray light-sheet-microcopy single-molecule-localization microscopy-image-analysis x-ray-light-sheet-microscopy
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Dec 7, 2024 - Python
Bei Liu's personal website
microscopy biosensors optogenetics superresolution single-molecule-imaging light-sheet-microcopy phagocytosis adhesion-biology
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Aug 21, 2019 - CSS
cells activity, voxel_to_volume in tissue conversion, density and stats
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Aug 17, 2022 - Jupyter Notebook
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