A collection of resources on applications of Transformers in Medical Imaging.

Medical image registration using deep learning

[ICCV 2019] Recursive Cascaded Networks for Unsupervised Medical Image Registration

Medical Image Registration

[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities

(This repo is no longer up-to-date. Any updates will be at https://github.com/DeepRegNet/DeepReg/) A demo of the re-factored label-driven registration code, based on "Weakly-supervised convolutional neural networks for multimodal image registration"

The official website for uniGradICON: A Foundation Model for Medical Image Registration

Fully unsupervised 2D/3D image registration with ConvNet (TensorFlow)

A Comprehensive Survey of Mamba Architectures for Medical Image Analysis: Classification, Segmentation, Restoration, and Beyond

MvMM-RegNet: A new image registration framework based on multivariate mixture model and neural network estimation (MICCAI 2020)

[MICCAI 2024] On-the-Fly Guidance Training for Medical Image Registration. Pre-print available in link below.

Joint Vessel Segmentation and Deformable Registration on Multi-Modal Retinal Images based on Style Transfer

Code used to create the DeepHistReg submission to the ANHIR challenge.

Medical Image Analysis Lab (MIALab), University of Bern

Efficient dense deformable image registration

Mutual-Information Medical Image Registration: Theory and Examples

DeDA: Differentiable Image Integration Library

TensorFlow implementation of the diffeomorphic demons algorithm for medical image registration

Preprocessed IXI brain MRI dataset with subcortical segmentation