An analysis and visualization platform for 'omics data
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Updated
Dec 2, 2024 - Python
An analysis and visualization platform for 'omics data
SortMeRNA: next-generation sequence filtering and alignment tool
sensitive and precise assembly of short sequencing reads
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Meta-Omics Software for Community Analysis
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
Pipeline for metagenome and metatranscriptome joint assembly
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
Open-source opinionated Galaxy-based framework for microbiota analysis
gNOMO2 allows integrated multi-omics analyses of microbiomes
Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
Comparative Metatranscriptomics Workflow
Interactive visualisation and data annotation for meta-omics data
🍰 Per sequence functional classification and taxonomic assignments
Taxonomic classification of metagenomic contigs
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
Repository associated with Jenior ML, et al. (2018). mSphere.
Metagenomics and Metatranscriptomics pipeline
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