The bridge between the NCBI Gene Expression Omnibus and Bioconductor

Microarray Analysis Pipeline in Python

Subclassification of disease states based on the intersection of literature and expression

analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)

useful little tools & code snippets without a home; mostly genomics-oriented and one-liners

A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.

Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio

This repository contains a Jupyter Notebook for the analysis of Non-Small Cell Lung Cancer (NSCLC) data using various machine learning techniques.

Volcano Plot for Gene Expression Analysis

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Automatic NGS data analysis from SRA download to the quantification of RNAs.

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).