Annotation and Ranking of Structural Variation

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🐌Yet Another Simulation Architecture

Integrative analysis of structural variations.

A tool for simulating random mutations in any genome

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

YAMM package repository

Structure variants calling and genotyping scripts for pan-Zea

A simple script to create a customizable html file from an AnnotSV output.

🍬UVM candy lover testbench which uses YASA as simulation script

CADD-SV – a framework to score the effect of structural variants

trackc aims to produce beautiful genome tracks that are highly customizable

Three short add-on scripts for runit "sv"

An all-purpose website to manage SV maps and players, based on Quaver.

Snakemake pipeline for SV discovery and analysis

Fundamental system mechanisms, algorithms and their execution. Programs use ipc, signals, sockets, forks and manage files and memory in unix systems.

an infrastructure to implement arbitrary indirect registers on top of uvm

An integrated retroduplication caller based on 1) exon-exon junction and 2) discordant reads

Atom-linter provider that runs vcs and parses output. This can be used as a systemverilog (/verilog/vhdl) linter.