Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Snakemake pipeline for simulating shotgun metagenomic samples

snakemake-powered cli to download genomes using NCBI datasets

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

zDB: comparative bacterial genomics made easy

A tool for the identification of coincident (associating and dissociating) genes in pangenomes.

Genome-scale protein function classification

Interactive viewer of phylogenetic trees

PaperBLAST: find papers about a protein or its homologs

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

chlamdb.ch website code

The Fast Cross-Platform Package Manager