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Commits on Apr 8, 2012

• compute CIGAR; rev seq not working

  lh3

  committed
  1cef219

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Commits on Apr 7, 2012

• towards refined gapped; unfinished

  lh3

  committed
  66154ff

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Commits on Mar 29, 2012

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

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Commits on Mar 19, 2012

• bugfix: long-existing out-of-boundary bug

  lh3

  committed
  a471f19

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Commits on Nov 19, 2011

• avoid duplicated XA tags

  

  Heng Li

  committed
  dc40089

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Commits on Oct 25, 2011

• fixed a minor issue about +/-1

  

  Heng Li

  committed
  7664795

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• concatenate for-rev sequences in the end

  

  Heng Li

  committed
  aabb807

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Commits on Oct 24, 2011

• bugfix: integer overflow and strand error in sampe

  

  Heng Li

  committed
  7b4266a

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Commits on Oct 21, 2011

• use forward-only pac to reduce memory

  

  Heng Li

  committed
  1cb409a

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Commits on Oct 20, 2011

• PE seems working; more testing needed

  

  Heng Li

  committed
  ec307a1

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Commits on May 4, 2011

• applied patches from Alec Wysoker

  

  Heng Li

  committed
  243e735

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Commits on Jan 15, 2011

• Added barcode support

  

  Heng Li

  committed
  51d354c

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• Added an option to accept Illumina 1.3+ fastq

  

  Heng Li

  committed
  10721ca

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• fixed a bug in bwase: no RG for unmapped read pairs

  

  Heng Li

  committed
  f335b33

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Commits on Jan 14, 2011

• Update to the latest modfication 0.5.9rc1-2. Update ChangeLog

  

  Heng Li

  committed
  5e30884

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• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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