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Commits on Aug 22, 2012

• use BCR by default

  lh3

  committed
  2b90aac

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Commits on Aug 15, 2012

• r741: logging bcr

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  lh3

  committed
  5aae7a3

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Commits on Jul 11, 2012

• r718: run-fermi.pl supports BCR

  lh3

  committed
  7e61e5a

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Commits on Apr 19, 2012

• r706: documented contrast assembly

  lh3

  committed
  ed00e1a

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Commits on Mar 20, 2012

• parse BAM input

  lh3

  committed
  b15e4cb

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Commits on Feb 29, 2012

• updated manual

  lh3

  committed
  efe2af5

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Commits on Feb 28, 2012

• trim reads during error correction

  lh3

  committed
  621063b

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• run-fermi.pl: break contigs with PE reads

  lh3

  committed
  91896cc

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Commits on Feb 23, 2012

• updated run-fermi.pl

  lh3

  committed
  99ce8fc

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Commits on Feb 20, 2012

• run-fermi: improve dependency; ma-stats: min len

  lh3

  committed
  abf17c5

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Commits on Feb 16, 2012

• optionally trimming; trim 1bp for for-rev reads

  

  Heng Li

  committed
  ea1d97c

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• double the number of jobs for building split index

  

  Heng Li

  committed
  bada544

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Commits on Feb 15, 2012

• use -CAOF for the 2nd round cleaning

  

  Heng Li

  committed
  7fe0736

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• run-fermi.pl works again

  

  Heng Li

  committed
  b7e011c

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Commits on Jan 18, 2012

• nothing, really

  

  Heng Li

  committed
  2f32ba9

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• command line prompt

  

  Heng Li

  committed
  7ef7846

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Commits on Jan 3, 2012

• correct errors in pairext; refine run-fermi.pl

  

  Heng Li

  committed
  28e80e7

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• optionally apply aggressive bubble poping

  

  Heng Li

  committed
  0799485

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Commits on Jan 2, 2012

• added pairext to run-fermi.pl

  

  Heng Li

  committed
  aac59fb

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Commits on Dec 15, 2011

• output read mapping

  

  Heng Li

  committed
  259c877

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• removed PE extension and overlap-only unitig

  

  Heng Li

  committed
  94ce267

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• updated manual

  

  Heng Li

  committed
  045fadf

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Commits on Dec 14, 2011

• command help

  

  Heng Li

  committed
  bf3d331

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• PE mode works

  

  Heng Li

  committed
  2ee0e06

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• make re-entry

  

  Heng Li

  committed
  455abda

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• fixed a parallelization problem

  

  Heng Li

  committed
  881a728

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• unitig: comments; run-fermi.pl: PE mode

  

  Heng Li

  committed
  01fc6e6

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Commits on Dec 13, 2011

• working on PE makefile

  

  Heng Li

  committed
  5406920

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• Makefile generator

  

  Heng Li

  committed
  89917dc

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