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jeromekelleher

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Commits on Dec 2, 2024

• Merge pull request #3065 from hyanwong/fwdpp-url

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  9dcae00

Commits on Nov 20, 2024

• Merge pull request #3058 from nspope/fix-coalrate-timedim

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  b31d4d1

Commits on Sep 19, 2024

• Merge pull request #2989 from nspope/pair-coalescence-windows-fix

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  a0baaaf

Commits on Sep 18, 2024

• Merge pull request #2938 from hfr1tz3/extend_edges

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  dcee409

Commits on Sep 17, 2024

• Merge pull request #2987 from nspope/pair-coalescence-quantiles-fix

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  600a18c

Commits on Jun 27, 2024

• Change build-time dependency to numpy 2, Drop Python 3.8, add 3.12, Add pyproject.toml

  

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Commits on May 7, 2024

• Drop metadata schemas on tables.

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  a1aa362

Commits on Apr 25, 2024

• Drop codecov target for lwt to 80%

  

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  308f67e

• Merge pull request #2935 from benjeffery/fix-osx

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  2c6c5a6

Commits on Jan 16, 2024

• Add check for non-single sample sets and disable tests

  

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  2dae133

• Support sample sets in divmat

  

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Commits on Sep 4, 2023

• Merge pull request #2805 from lkirk/two-site-stats-c-api

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Commits on Aug 23, 2023

• Merge pull request #2826 from jeromekelleher/test_infrastructure_maint

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  d6c9cf7

• Bump lowest test version to Python 3.8

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  bc7b125

• Change default for random_ploidy_individuals

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  452cc95

• Remove (incorrect) nose warnings from test_highlevel.py

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  082a9c9

• Merge pull request #2798 from astheeggeggs/diploid_merge

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  4f0fc78

• Update test name in file deletion workaround

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  af237c3

• Speed up diploid LS tests by reducing parameter space checked

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  09ae207

Commits on Aug 16, 2023

• Add support for string window-specs to divmat

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  0ce4eac

• Implement span_normalise for divmat

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Commits on Aug 15, 2023

• Merge pull request #2813 from jeromekelleher/better-divmat-site-mode

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  7190c2d

• Site divmat based on genotype decoding

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  efc3313

Commits on Aug 6, 2023

• Merge pull request #2799 from jeromekelleher/ls-forward-native

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  b6f9872

• Update lshmm requirement to 0.0.5

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  64aedbf

• Backwards algorithm in LSHMM

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  c9f26c8

Commits on Jul 18, 2023

• Merge pull request #2786 from jeromekelleher/incremental-trees

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  ab5ef8f

• Convert LS HMM code to use tree_position_t

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  2c264be

• Convert kc_distance to use tree_position_t

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• Initial version of tsk_tree_position_t and tests

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Commits on Jul 13, 2023

• Improve error handling on weighted stats

  

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  60d75c6

• fix docs

  

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• Fix memory bug.

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  6912a46

• Add tests for weighted genetic relatedness.

  

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Commits on Jul 11, 2023

• Divergence matrix tree-by-tree algorithms

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