Official code for "Boundary loss for highly unbalanced segmentation", runner-up for best paper award at MIDL 2019. Extended version in MedIA, volume 67, January 2021.

Repository associated to the UQinMIA Tutorial @ MICCAI 2023

Repo for all of my textbooks

technical books

Master programming by recreating your favorite technologies from scratch.

Library for generating images by sampling a GMM conditioned on label maps

3D Slicer extension for fully-automatic segmentation of CT and CBCT dental volumes.

My personal dotfiles.

Implementation of the generalized 2D convolution with dilation from scratch in Python and NumPy

Champion Solution of MICCAI FAIRY2023 Challenge based on Self-training with Selective Re-training.

Benchmarks for generative chemistry

interactive visualization of 5 popular gradient descent methods with step-by-step illustration and hyperparameter tuning UI

R Source Code

Repository relative to the ToothFairy challenges, MICCAI2023 & MICCAI2024

[IEEE JBHI'21] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!

Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and rela…

Python library to download bulk of images from Bing

Minimal and clean examples of machine learning algorithms implementations

Autoencoders for genomic data compression, classification, imputation, phasing and simulation.

Code for Learning Shell

This repo holds a straightforward implementation of a Non-Uniform Label Smoothing regularization technique (N-ULS)