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fixes 1 #24

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merged 12 commits into from
Nov 27, 2024
Merged

fixes 1 #24

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5e15d62
fix: fix more mistakes
igboyes Jul 29, 2024
f8312d9
fix: more otu fixes
igboyes Jul 31, 2024
4553757
feat: add new viruses
igboyes Aug 1, 2024
7f98fe2
feat: add more isolates
igboyes Aug 1, 2024
9709af4
feat: more manual fixes
igboyes Aug 2, 2024
f4aeb03
fix: add missing taxids
igboyes Aug 2, 2024
8c5406f
chore: reformat json
igboyes Aug 2, 2024
d70fbd9
chore: more cleanup
igboyes Aug 8, 2024
9b1a862
fix: remove otus with isolate_source as name type
igboyes Aug 8, 2024
7d83958
fix: make some segment names consistent
igboyes Aug 8, 2024
824f33c
fix: update gitignore
igboyes Aug 8, 2024
e0d9b91
fix: fix segment names
igboyes Aug 8, 2024
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chore: reformat json
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@igboyes
igboyes committed Aug 2, 2024
commit 8c5406f890cfc4e9daeda03b9f585353ac502fba
22 changes: 11 additions & 11 deletions src/a/achyranthes_bidentata_mosaic_virus/otu.json
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{
"_id": "aNPsLwhJ",
"name": "Achyranthes bidentata mosaic virus",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2793794
"_id": "aNPsLwhJ",
"name": "Achyranthes bidentata mosaic virus",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2793794
}
14 changes: 7 additions & 7 deletions src/a/achyranthes_bidentata_mosaic_virus/ycd/hfsHnaa2.json
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8 changes: 4 additions & 4 deletions src/a/achyranthes_bidentata_mosaic_virus/ycd/isolate.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"id": "ycd",
"source_type": "isolate",
"source_name": "Zhejiang",
"default": true
"id": "ycd",
"source_type": "isolate",
"source_name": "Zhejiang",
"default": true
}
14 changes: 7 additions & 7 deletions src/a/aconite_virus_a/290/715cms66.json
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8 changes: 4 additions & 4 deletions src/a/aconite_virus_a/290/isolate.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"id": "290",
"source_type": "strain",
"source_name": "HB",
"default": true
"id": "290",
"source_type": "strain",
"source_name": "HB",
"default": true
}
22 changes: 11 additions & 11 deletions src/a/aconite_virus_a/otu.json
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@@ -1,13 +1,13 @@
{
"_id": "3FbG083N",
"name": "Aconite virus A",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2764701
"_id": "3FbG083N",
"name": "Aconite virus A",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2764701
}
14 changes: 7 additions & 7 deletions src/a/aconitum_potyvirus_1/8kl/WSyyXDeK.json
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8 changes: 4 additions & 4 deletions src/a/aconitum_potyvirus_1/8kl/isolate.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"id": "8kl",
"source_type": "isolate",
"source_name": "AcoPV1-MY",
"default": true
"id": "8kl",
"source_type": "isolate",
"source_name": "AcoPV1-MY",
"default": true
}
22 changes: 11 additions & 11 deletions src/a/aconitum_potyvirus_1/otu.json
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{
"_id": "s23uZoRj",
"name": "Aconitum potyvirus 1",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3041211
"_id": "s23uZoRj",
"name": "Aconitum potyvirus 1",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3041211
}
22 changes: 11 additions & 11 deletions src/a/aconitum_potyvirus_2/otu.json
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{
"_id": "KABu47We",
"name": "Aconitum potyvirus 2",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3042374
"_id": "KABu47We",
"name": "Aconitum potyvirus 2",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3042374
}
14 changes: 7 additions & 7 deletions src/a/aconitum_potyvirus_2/zcu/ES8OThlB.json
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8 changes: 4 additions & 4 deletions src/a/aconitum_potyvirus_2/zcu/isolate.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"id": "zcu",
"source_type": "isolate",
"source_name": "AcoPV2-MY",
"default": true
"id": "zcu",
"source_type": "isolate",
"source_name": "AcoPV2-MY",
"default": true
}
22 changes: 11 additions & 11 deletions src/a/adenium_obesum_virus_x/otu.json
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{
"_id": "YN3TlBKw",
"name": "Adenium obesum virus X",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3074438
"_id": "YN3TlBKw",
"name": "Adenium obesum virus X",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 3074438
}
14 changes: 7 additions & 7 deletions src/a/adenium_obesum_virus_x/v84/3vpem0XF.json
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
{
"_id": "3vpem0XF",
"accession": "OR039325.1",
"definition": "Adenium obesum virus X isolate B27, complete genome",
"host": "Adenium obesum",
"segment": "genome",
"sequence": "GGAAAACACACCACAAACCAACCCACCACAACCTACCTCAAACCAGCCCTTTATAACAACACTAGTGGTCTTTGACCTCCGTCCAGTTATTATGGCTTTGGTTTCCAAGGTACTTGCAAACGTCACTGACGCCTCAGTCAGGGCAGTTGTACAAGAAGAAGCTTACAAAACTATACGACCCATCCTCAAACAAGCTCAACTTGTCAACCCCTACGCCATTCCAGAAGCGGCTGCTGATGACCTAGAAAAACTAGGAATCATCACCAATCCCTACTCCATTGCACTTCACACACACGCTGGTGTGAAAGCAATTGAGAACAAACTCCTTGGAATCGTAGGCGAATACTTGCCGCAGAGGGAGAGAACCACATTCCTCTACCTCAAACGCAGCAAGTTAAGATTTCTCAGGAGAGATCCTAGACTCAAGGATTACTTCATGAACCAAATGATCACTCCTAGAGACGCAGCCAGATATTCTGAAGACACACTTATAAAAGAGGATCTACAAATCCCAACCACCACGGCTTACATTAGTGACACACTACACTTTTTAAGCCCAGAATATCTCATCAGGCTATTTGAGGCATCCCCTGCACTTGATGTACTCTATGCAACTCTGGTTCTACCCCCAGAGGCACTCTACAGGATGCAATCTCTCTACCCCAACCTCTACACCCTCAACTACTCCCAGTACGGCGGGTACCAATACTTGCCAGGAGGTTGCGGTGGTGCCGCTTACCACCATGAGATGAAAACTCTAGACTGGTTAAAGTATGATCATATCATCTCACCCAACGTAACCATCACCGCTGAAATTGTAGAAAGTTTAGCTGCTAACCATTTGTACATATTCAAAAGGGGGAAAATGTTCACCCCACCCATTAGGACTTTCAGAGCTGATGAAATGGTCTTGCTCCCACAAATCTTCCACCCCTCAGAGTACAACGCTGTCAAACCAATCAGCAAAACTCTTGCCATGCAGTTGCTTCTCTACTGCAAATCACTCAAGACTGTAACGGAGCGGGATATTTATGCTAAAATTAGGCAACTGATCCCAACCAACCAATTAGCCAATTTCTCCCAAGATGAAATAATTCATATGGCTAATTACTTCTCCTTCATGGCTGAATTGGACTCAACCAACTCTTTTGACAAAATTCTTTCCATGTCCTGCTTCAAGAAGTTTCTCATGCCCATAAAGAACAAATTTATTGTCTGGTATGAGAAGATCTTTGGTCAGAGAGATTTCCTTCAACTCATGAAGGCACTTGAATGGAAAACATTTTCACATTCAATTAAGACTGAGCAGTACTCAGTCACATTCAAAGAGAACTCAAAAGAGCTCTGGACCAAGGCCTCACTACCTGAAATTGAACCTTCTGAAGAGGATCTTTCCGACCCTACTCAGTTGTCTGAATCACAGCTCCAAAATGTCAATACGGAGCCCCTACCAACACAACCCGCCGGCTCCCTCACACCCAAGGCCTTACCTGCACCACCCACACCCCCTGGTTTCAACATCCCTACAGACACCCAAACCACCCCAGACTTCATTAACACATGTTTGCAGCCAGTTAAAACTTTCAAATGCCTATGCCAAGCACCCACCACCATCCTACACCACACCAAGTTGGCCTATGCTCATGAGGCTGCCAACCTGCTACACCTAGACCAGGTCAAGACCCACACCACAAGCCCAATACCCAACAACCAAAAGCTCTTTGCTCCTGGATTTGACCCAGTTGGCGGAGCCTTCATCTTCACCAACGTCCCAGCTGTGCTCAAGGTGCAATGCTACCGCGGACAGACAAACATCGACCTGGACCCGGGCCAAACAGCCCAGATCCACGACTTCTTTCTACAAGGCCATGACCTGTCCATAGAAACACTACTACCTGGCACAGTCACCACATTCACATCCCTGGACCCAAAGATGCTTGTGCACAAACTTCAGGACGCTCTGCTGCAAGCAAACAACTCCTCACACCCGCCAACCACAGATACACCCTCCACCTCCTCACAGCCAAATCTTGGTGAATGCTCTACACCCTCCACAACTAAGGTGACAACAATCCCTCCATCACAGAACAGTCCCACACTTGCCTCAGTCACCACACCGTTGCCACACCCTTCCAACAAGCCCCTTCAGATCAATGAGCCACAACCTGACCCCATGACCAACCACTCCCACACAGAACCCCAACCAATCGGAAAGGGCAAAGAGAAAGTTGATTGCCCCGAGCCCTCGAAAGCTGAGAAAATGATGACAAAAATGGGCTACACACCCGGTGAAGGTCTAGGCAAACAACACCAAGGGGTTCTAACTGAACCAAAGATTGAAATAATCCCAAAAAGAGCAGGCCTTGGCTCCGCCTCACCAAAACCTTCAGCCCCTGAGGATTTGGGCATTGAAATCCCTTGGAAATCCTGGCTCCCCATACTGAACTCTGTTGGATTCAAAGGCAATCAGATGCAGTACTCAGACCACAAGAGAACTAATCTGATAATCCCAATCACAAGACAACACAAGCTACCCCGCTCTGAGGGGCTCGAAGACTTGGACCCAAATCTCATTCTAGCCCTCAAGTCCATCAGCCGCTTTCCCACACCAGTTCTACTTTCAGGTACTCGGGCAGCAGCCTATGCTTCTGACTTGAAGAATTGCAGAACGGGCCTGCTCGGCAAAACCCAACCTTTGGAATGGAAGCAAAAGTTCTCCCTCATGTGTGAAAGGAGCCCTGATATGACAGTGCAGATGTCCGTGATTCACGGTGCTGGAGGCTCTGGCAAGTCCCGTTTCCTCCAAAATTGGCTCAAAACATTTGAACAAGACAATTGCCCAGCTACAATTGTCGTCCCCACCAATGAACTCAGGCTTGATTGGGAGGGAAAACTTCCCAACATCAACAGGCTGCTGATCAAAACTTTTGAAAAGGCACTAATAGCTGGTTCAGGACAAATAGTCATCTTTGATGATTATGGGAAAATGCCAGCTGGTTTCATTGAGGCATACATATTCTCGCATCCGGCCGTTGAGCTTGCCATTCTAACCGGGGACCCCAGACAAAGTTCATACCATGAGGATAATGACATGGCCCTCATCTCCAAGCTCGACCCAGGCCCCTCCCACTTTGACCAGTACTCAAGGTACTATCTGAACTGCACACACAGGAACAGGAGAGACATTGCAAATAAGCTGGGCGTCTACTCCGAGACTGAGGGACCGTGTTCCATCACAATCTCTAGTCAAGTGCTTAAAGGAATTCCTATTCTTACCCCCTCCATGATCAAAAAGACAGCCATCACTGAGTTGGGCAACAAAGGATACACTTATGCCGGCTGCCAGGGACTCACAGCTCCCAAAGTTCAAATCCTGCTCGATTCCAACACCCCATTCTGCTCCGATGAGGTGATGTACACAGCTTTATCCAGATCTGTAGAAATGATTCACTTTATCAACACTGGACCTAACTCTCAGGAGTACTGGACCAAGTTGGACGCCACTCCATACCTCAAAACTTTCCTTGACACTGCCAGAGAGGAGGCCATGGCAAAAATTACCAGCCTAGAACCTCAAGTTCCAGAGCCCAAAATCCCCACACACTTCCCTGTTGAGCATCAGGACATACAGCTTGAGGACTACATTGAGGGGCAAAAGGAAAAGTATGACCGAGAGATCTTTGACAGCAGGCACGGTCACACCAACTGTATACAAACTGATGACCAATTAGTGCAAATCTTCCAACACCAGCAGGCTAAGGATGAGCCTCTTCTCTGGGCTACCATTGAGGCTCGCATCAAGACTGCATCACCGGAGCAAAACCTGAAAGAGCTGGCATTAAAAAAAGACATTGGTGACTTGCTCTTCCTCAACTACAAGAGAGCCATGCATTTGCCTGACCAACCTGTGCCTTTTGATCCCCGACTGTGGGAGCTGTCTGCCACTGAAGTCCGCAACAAATACTTGGAGAAGCCCATCAACATGCTGGTCAATGCCGCTCAACGACAATCTCCTGACTTTGACAAGGAGAAAATTGCACTCTTCCTAAAGTCACAGTGGGTTAAAAAAGTTGAGAAATTGGGTGCTCTGAAAGTAAAGCCCGGCCAAACTATAGCAGCCTTCATGCAGGAAACTGTAATGCTATACGGAACAATGGCCCGCTACCTGAGGAAAATGAGAGCAGTATTCCAACCCAAGAACATCTTCATCAACTGTGAAAAGACTCCTGAAGACCTCAACCAATTCGTGCTCGAAAACTGGAACTTCTCAAGAACTGCATACTCTAATGACTTCACAGCCTTTGACCAATCACAAGATGGTGCCATGCTCCAGTTTGAGGTACTTAAGGCCAAACACTTCAACATCCCGGCTGACATCATTGATGGATATGTGCACCTTAAAACACATGCCACAATCTTCCTTGGCACCCTGGCCATAATGAGACTTACAGGTGAAGGCCCCACTTTCGATGCTAACACTGAATGTTCCATTGCCTACCACCACACCAGGTTCCATGTGCCAGACAATGTGGCCCAACTTTATGCTGGTGATGATTCCGCCCAAGACCATCCTGCAATTGAAAAGAAAAGCTTCCAACTGATCCAGAACAAACTGAATCTCACGTCCAAACCAGTCACGTACCAACAAAAACCGGGCGACTGGGCCGACTTCTGCGGGTGGACTATCAGCAGACTGGGCATCTTCAAGAACCCTACCAAAATTTTGGCCAGCCTTGAACTAGCCATTAAAACTGGCAAAACCAAGGAAGTAGCTACCAGTTATGCCCTCGATGCCAAATTTGCTTACCAACTTGGGGACAAATTGCAAGAAGTACTTTCAGAGAAGGAGTGTGGCATGCACCAAACACTCATCAGAAAGATTCACAAGATAGGAACAGGGCACCTATTGGAGGGTTTAAGTTGATCTTAGTTTGAAATGGACAACTTAGTCATTACCGAATTAACCCGTTTGCAACTAACACGCACATCCCGTCCCCTCTCCAAACCCATCATAATCCACCTGGTAGCAGGCGCTGGCAAGACCACCATCATCAGAAAACTCCTAACCATCCATCACACCATTAGAGCCTTCACCTGTGGCACTCCCGACCCCCCCTCCCTTACTGGCACTCACATCCTACCCTGGAAGAGTGAAAGACCAGGCACCACAACCCTCCTTGACGAATACCCACTAGCCACTGACTACCAAGCAGCTGACTTCTGTTTCGCTGACCCTATCCAACACAACATCACCGAACCGTATCCACACTTTACCAGCAACTTCACCCACCGTGTGCCTGAACCCATCTGTAACCATCTAAGGTCACTCACATTTGACATCCATTCAACCAAAGCGGGATCCTTAACATTTGAAAATATCTTCCAAGGTGAACCCATTGGTACCATCATAGCTTGGGAGCCTGAAATCATCCGCCTCCTCAACTCCCACCAAGCTCACTATCTCCGACCATGCCAGGCTCTAGGACTCCAATTTGACACTGTCACCGTCATCACTCTCGAGCCCAAACCCACCCATTTGTACTACATCGCCTGCACCCGCTCCCTCAACAAACTCATCATCAAATGCCTCTCACCCCACCGCCTAACCACATTAGGGAATTGACACCATTTCTACTAGGTTTTGCATTAGTTCTAGCCATCTTCACTTGCACCCGCAACACTCTACCCCACACTGGTGACAACATCCACAGTCTTCCTTTCGGTGGCTCATACATCGACGGCACCAAGAGAATTAACTACTTACCACCCAAAGGTCAAGGTACCTTCTTCCCCTCTCATGCACAACGAGCACACCTCCCCGCCATCCTTGTTTGCATTCTTCCACTTGTCATTTTCCTTCTACATAAAGCTACTACTAGGAATAACCCTGGGCATACTTGTACTACTTGCTCTTCCCAGACCCTATGAACCCTGTACCATCATCATCACAGGGGAGCGAGTCACAGCACATGGTTGCCCAGTCACTCAGGAACTTGCCAACATACTCAGCAACAGAGAGGCCCTACACGCCGTTAAGTTTCCAATCAATTCTGAATAGAGTTATGGACACCTCAGACACAGACACCGCTTCGACTGTAATTCTCTCCGACCTCTCAGACCCTACCATTAGTCCATCTCTAGCAGATTTGAAGAGGATAACTTACAAAACACACTCCAACTCTGTTGCATCACCTGAGACAGTGAAGGCCATCGCTAAAGAATGGGTTGAAAACGGCGTCCCCGCTGACCAAGTGGCGCTCGCAGCTTGGAGCCTCGCCATCTACTGCGCAGACAATGGCTCCTCAGACCAAACTGAGTTTGAGGGCTCAATCTCCGACCTCTCAGTATCATATGACACTCTTGCCCGCATCACCAAGAAACACACCACACTGCGCAAATTCTGCTCATACTATGCAAAGATAGTGTGGAACCTGCTTATTGAGAGGCAATCACCACCCGCGGGCTGGGCCAAATGGAACTACCGCAAATCTGAAGCCTTCGCCGCTTTCGATTTCTTTGACGCTGTTACCAACCCTGCAGCCCTTGAACCAAAAGAGGGGTTGGTTCGCCAACCCACCCAAAATGAGCTATTGGCCAAAGGCACAAACAAGATGGCATCCCTCCATGAGGCGGCCAAACAGACTCTTCACACTGTCTCCAACTATGCAGGTGTAACCCAAGGACGCCTTCCACGTCCAACTCTGCCTGCCATTGAGGCTCCCGAATATTAATGCTGGTATAACTTAATACTACTATAGCTTTTGGTTTGAATAAAGTTTCCAAAAAAAAAAAAAAAAAA",
"target": null
"_id": "3vpem0XF",
"accession": "OR039325.1",
"definition": "Adenium obesum virus X isolate B27, complete genome",
"host": "Adenium obesum",
"segment": "genome",
"sequence": "GGAAAACACACCACAAACCAACCCACCACAACCTACCTCAAACCAGCCCTTTATAACAACACTAGTGGTCTTTGACCTCCGTCCAGTTATTATGGCTTTGGTTTCCAAGGTACTTGCAAACGTCACTGACGCCTCAGTCAGGGCAGTTGTACAAGAAGAAGCTTACAAAACTATACGACCCATCCTCAAACAAGCTCAACTTGTCAACCCCTACGCCATTCCAGAAGCGGCTGCTGATGACCTAGAAAAACTAGGAATCATCACCAATCCCTACTCCATTGCACTTCACACACACGCTGGTGTGAAAGCAATTGAGAACAAACTCCTTGGAATCGTAGGCGAATACTTGCCGCAGAGGGAGAGAACCACATTCCTCTACCTCAAACGCAGCAAGTTAAGATTTCTCAGGAGAGATCCTAGACTCAAGGATTACTTCATGAACCAAATGATCACTCCTAGAGACGCAGCCAGATATTCTGAAGACACACTTATAAAAGAGGATCTACAAATCCCAACCACCACGGCTTACATTAGTGACACACTACACTTTTTAAGCCCAGAATATCTCATCAGGCTATTTGAGGCATCCCCTGCACTTGATGTACTCTATGCAACTCTGGTTCTACCCCCAGAGGCACTCTACAGGATGCAATCTCTCTACCCCAACCTCTACACCCTCAACTACTCCCAGTACGGCGGGTACCAATACTTGCCAGGAGGTTGCGGTGGTGCCGCTTACCACCATGAGATGAAAACTCTAGACTGGTTAAAGTATGATCATATCATCTCACCCAACGTAACCATCACCGCTGAAATTGTAGAAAGTTTAGCTGCTAACCATTTGTACATATTCAAAAGGGGGAAAATGTTCACCCCACCCATTAGGACTTTCAGAGCTGATGAAATGGTCTTGCTCCCACAAATCTTCCACCCCTCAGAGTACAACGCTGTCAAACCAATCAGCAAAACTCTTGCCATGCAGTTGCTTCTCTACTGCAAATCACTCAAGACTGTAACGGAGCGGGATATTTATGCTAAAATTAGGCAACTGATCCCAACCAACCAATTAGCCAATTTCTCCCAAGATGAAATAATTCATATGGCTAATTACTTCTCCTTCATGGCTGAATTGGACTCAACCAACTCTTTTGACAAAATTCTTTCCATGTCCTGCTTCAAGAAGTTTCTCATGCCCATAAAGAACAAATTTATTGTCTGGTATGAGAAGATCTTTGGTCAGAGAGATTTCCTTCAACTCATGAAGGCACTTGAATGGAAAACATTTTCACATTCAATTAAGACTGAGCAGTACTCAGTCACATTCAAAGAGAACTCAAAAGAGCTCTGGACCAAGGCCTCACTACCTGAAATTGAACCTTCTGAAGAGGATCTTTCCGACCCTACTCAGTTGTCTGAATCACAGCTCCAAAATGTCAATACGGAGCCCCTACCAACACAACCCGCCGGCTCCCTCACACCCAAGGCCTTACCTGCACCACCCACACCCCCTGGTTTCAACATCCCTACAGACACCCAAACCACCCCAGACTTCATTAACACATGTTTGCAGCCAGTTAAAACTTTCAAATGCCTATGCCAAGCACCCACCACCATCCTACACCACACCAAGTTGGCCTATGCTCATGAGGCTGCCAACCTGCTACACCTAGACCAGGTCAAGACCCACACCACAAGCCCAATACCCAACAACCAAAAGCTCTTTGCTCCTGGATTTGACCCAGTTGGCGGAGCCTTCATCTTCACCAACGTCCCAGCTGTGCTCAAGGTGCAATGCTACCGCGGACAGACAAACATCGACCTGGACCCGGGCCAAACAGCCCAGATCCACGACTTCTTTCTACAAGGCCATGACCTGTCCATAGAAACACTACTACCTGGCACAGTCACCACATTCACATCCCTGGACCCAAAGATGCTTGTGCACAAACTTCAGGACGCTCTGCTGCAAGCAAACAACTCCTCACACCCGCCAACCACAGATACACCCTCCACCTCCTCACAGCCAAATCTTGGTGAATGCTCTACACCCTCCACAACTAAGGTGACAACAATCCCTCCATCACAGAACAGTCCCACACTTGCCTCAGTCACCACACCGTTGCCACACCCTTCCAACAAGCCCCTTCAGATCAATGAGCCACAACCTGACCCCATGACCAACCACTCCCACACAGAACCCCAACCAATCGGAAAGGGCAAAGAGAAAGTTGATTGCCCCGAGCCCTCGAAAGCTGAGAAAATGATGACAAAAATGGGCTACACACCCGGTGAAGGTCTAGGCAAACAACACCAAGGGGTTCTAACTGAACCAAAGATTGAAATAATCCCAAAAAGAGCAGGCCTTGGCTCCGCCTCACCAAAACCTTCAGCCCCTGAGGATTTGGGCATTGAAATCCCTTGGAAATCCTGGCTCCCCATACTGAACTCTGTTGGATTCAAAGGCAATCAGATGCAGTACTCAGACCACAAGAGAACTAATCTGATAATCCCAATCACAAGACAACACAAGCTACCCCGCTCTGAGGGGCTCGAAGACTTGGACCCAAATCTCATTCTAGCCCTCAAGTCCATCAGCCGCTTTCCCACACCAGTTCTACTTTCAGGTACTCGGGCAGCAGCCTATGCTTCTGACTTGAAGAATTGCAGAACGGGCCTGCTCGGCAAAACCCAACCTTTGGAATGGAAGCAAAAGTTCTCCCTCATGTGTGAAAGGAGCCCTGATATGACAGTGCAGATGTCCGTGATTCACGGTGCTGGAGGCTCTGGCAAGTCCCGTTTCCTCCAAAATTGGCTCAAAACATTTGAACAAGACAATTGCCCAGCTACAATTGTCGTCCCCACCAATGAACTCAGGCTTGATTGGGAGGGAAAACTTCCCAACATCAACAGGCTGCTGATCAAAACTTTTGAAAAGGCACTAATAGCTGGTTCAGGACAAATAGTCATCTTTGATGATTATGGGAAAATGCCAGCTGGTTTCATTGAGGCATACATATTCTCGCATCCGGCCGTTGAGCTTGCCATTCTAACCGGGGACCCCAGACAAAGTTCATACCATGAGGATAATGACATGGCCCTCATCTCCAAGCTCGACCCAGGCCCCTCCCACTTTGACCAGTACTCAAGGTACTATCTGAACTGCACACACAGGAACAGGAGAGACATTGCAAATAAGCTGGGCGTCTACTCCGAGACTGAGGGACCGTGTTCCATCACAATCTCTAGTCAAGTGCTTAAAGGAATTCCTATTCTTACCCCCTCCATGATCAAAAAGACAGCCATCACTGAGTTGGGCAACAAAGGATACACTTATGCCGGCTGCCAGGGACTCACAGCTCCCAAAGTTCAAATCCTGCTCGATTCCAACACCCCATTCTGCTCCGATGAGGTGATGTACACAGCTTTATCCAGATCTGTAGAAATGATTCACTTTATCAACACTGGACCTAACTCTCAGGAGTACTGGACCAAGTTGGACGCCACTCCATACCTCAAAACTTTCCTTGACACTGCCAGAGAGGAGGCCATGGCAAAAATTACCAGCCTAGAACCTCAAGTTCCAGAGCCCAAAATCCCCACACACTTCCCTGTTGAGCATCAGGACATACAGCTTGAGGACTACATTGAGGGGCAAAAGGAAAAGTATGACCGAGAGATCTTTGACAGCAGGCACGGTCACACCAACTGTATACAAACTGATGACCAATTAGTGCAAATCTTCCAACACCAGCAGGCTAAGGATGAGCCTCTTCTCTGGGCTACCATTGAGGCTCGCATCAAGACTGCATCACCGGAGCAAAACCTGAAAGAGCTGGCATTAAAAAAAGACATTGGTGACTTGCTCTTCCTCAACTACAAGAGAGCCATGCATTTGCCTGACCAACCTGTGCCTTTTGATCCCCGACTGTGGGAGCTGTCTGCCACTGAAGTCCGCAACAAATACTTGGAGAAGCCCATCAACATGCTGGTCAATGCCGCTCAACGACAATCTCCTGACTTTGACAAGGAGAAAATTGCACTCTTCCTAAAGTCACAGTGGGTTAAAAAAGTTGAGAAATTGGGTGCTCTGAAAGTAAAGCCCGGCCAAACTATAGCAGCCTTCATGCAGGAAACTGTAATGCTATACGGAACAATGGCCCGCTACCTGAGGAAAATGAGAGCAGTATTCCAACCCAAGAACATCTTCATCAACTGTGAAAAGACTCCTGAAGACCTCAACCAATTCGTGCTCGAAAACTGGAACTTCTCAAGAACTGCATACTCTAATGACTTCACAGCCTTTGACCAATCACAAGATGGTGCCATGCTCCAGTTTGAGGTACTTAAGGCCAAACACTTCAACATCCCGGCTGACATCATTGATGGATATGTGCACCTTAAAACACATGCCACAATCTTCCTTGGCACCCTGGCCATAATGAGACTTACAGGTGAAGGCCCCACTTTCGATGCTAACACTGAATGTTCCATTGCCTACCACCACACCAGGTTCCATGTGCCAGACAATGTGGCCCAACTTTATGCTGGTGATGATTCCGCCCAAGACCATCCTGCAATTGAAAAGAAAAGCTTCCAACTGATCCAGAACAAACTGAATCTCACGTCCAAACCAGTCACGTACCAACAAAAACCGGGCGACTGGGCCGACTTCTGCGGGTGGACTATCAGCAGACTGGGCATCTTCAAGAACCCTACCAAAATTTTGGCCAGCCTTGAACTAGCCATTAAAACTGGCAAAACCAAGGAAGTAGCTACCAGTTATGCCCTCGATGCCAAATTTGCTTACCAACTTGGGGACAAATTGCAAGAAGTACTTTCAGAGAAGGAGTGTGGCATGCACCAAACACTCATCAGAAAGATTCACAAGATAGGAACAGGGCACCTATTGGAGGGTTTAAGTTGATCTTAGTTTGAAATGGACAACTTAGTCATTACCGAATTAACCCGTTTGCAACTAACACGCACATCCCGTCCCCTCTCCAAACCCATCATAATCCACCTGGTAGCAGGCGCTGGCAAGACCACCATCATCAGAAAACTCCTAACCATCCATCACACCATTAGAGCCTTCACCTGTGGCACTCCCGACCCCCCCTCCCTTACTGGCACTCACATCCTACCCTGGAAGAGTGAAAGACCAGGCACCACAACCCTCCTTGACGAATACCCACTAGCCACTGACTACCAAGCAGCTGACTTCTGTTTCGCTGACCCTATCCAACACAACATCACCGAACCGTATCCACACTTTACCAGCAACTTCACCCACCGTGTGCCTGAACCCATCTGTAACCATCTAAGGTCACTCACATTTGACATCCATTCAACCAAAGCGGGATCCTTAACATTTGAAAATATCTTCCAAGGTGAACCCATTGGTACCATCATAGCTTGGGAGCCTGAAATCATCCGCCTCCTCAACTCCCACCAAGCTCACTATCTCCGACCATGCCAGGCTCTAGGACTCCAATTTGACACTGTCACCGTCATCACTCTCGAGCCCAAACCCACCCATTTGTACTACATCGCCTGCACCCGCTCCCTCAACAAACTCATCATCAAATGCCTCTCACCCCACCGCCTAACCACATTAGGGAATTGACACCATTTCTACTAGGTTTTGCATTAGTTCTAGCCATCTTCACTTGCACCCGCAACACTCTACCCCACACTGGTGACAACATCCACAGTCTTCCTTTCGGTGGCTCATACATCGACGGCACCAAGAGAATTAACTACTTACCACCCAAAGGTCAAGGTACCTTCTTCCCCTCTCATGCACAACGAGCACACCTCCCCGCCATCCTTGTTTGCATTCTTCCACTTGTCATTTTCCTTCTACATAAAGCTACTACTAGGAATAACCCTGGGCATACTTGTACTACTTGCTCTTCCCAGACCCTATGAACCCTGTACCATCATCATCACAGGGGAGCGAGTCACAGCACATGGTTGCCCAGTCACTCAGGAACTTGCCAACATACTCAGCAACAGAGAGGCCCTACACGCCGTTAAGTTTCCAATCAATTCTGAATAGAGTTATGGACACCTCAGACACAGACACCGCTTCGACTGTAATTCTCTCCGACCTCTCAGACCCTACCATTAGTCCATCTCTAGCAGATTTGAAGAGGATAACTTACAAAACACACTCCAACTCTGTTGCATCACCTGAGACAGTGAAGGCCATCGCTAAAGAATGGGTTGAAAACGGCGTCCCCGCTGACCAAGTGGCGCTCGCAGCTTGGAGCCTCGCCATCTACTGCGCAGACAATGGCTCCTCAGACCAAACTGAGTTTGAGGGCTCAATCTCCGACCTCTCAGTATCATATGACACTCTTGCCCGCATCACCAAGAAACACACCACACTGCGCAAATTCTGCTCATACTATGCAAAGATAGTGTGGAACCTGCTTATTGAGAGGCAATCACCACCCGCGGGCTGGGCCAAATGGAACTACCGCAAATCTGAAGCCTTCGCCGCTTTCGATTTCTTTGACGCTGTTACCAACCCTGCAGCCCTTGAACCAAAAGAGGGGTTGGTTCGCCAACCCACCCAAAATGAGCTATTGGCCAAAGGCACAAACAAGATGGCATCCCTCCATGAGGCGGCCAAACAGACTCTTCACACTGTCTCCAACTATGCAGGTGTAACCCAAGGACGCCTTCCACGTCCAACTCTGCCTGCCATTGAGGCTCCCGAATATTAATGCTGGTATAACTTAATACTACTATAGCTTTTGGTTTGAATAAAGTTTCCAAAAAAAAAAAAAAAAAA",
"target": null
}
8 changes: 4 additions & 4 deletions src/a/adenium_obesum_virus_x/v84/isolate.json
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@@ -1,6 +1,6 @@
{
"id": "v84",
"source_type": "isolate",
"source_name": "B27",
"default": true
"id": "v84",
"source_type": "isolate",
"source_name": "B27",
"default": true
}
14 changes: 7 additions & 7 deletions src/a/agapanthus_velarivirus/d7y/Ea4vtIzc.json
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8 changes: 4 additions & 4 deletions src/a/agapanthus_velarivirus/d7y/isolate.json
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"id": "d7y",
"source_type": "isolate",
"source_name": "19-3004",
"default": true
"id": "d7y",
"source_type": "isolate",
"source_name": "19-3004",
"default": true
}
22 changes: 11 additions & 11 deletions src/a/agapanthus_velarivirus/otu.json
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@@ -1,13 +1,13 @@
{
"_id": "s0EOryDD",
"name": "Agapanthus velarivirus",
"abbreviation": "",
"schema": [
{
"molecule": null,
"name": "genome",
"required": true
}
],
"taxid": 2838133
"_id": "s0EOryDD",
"name": "Agapanthus velarivirus",
"abbreviation": "",
"schema": [
{
"molecule": null,
"name": "genome",
"required": true
}
],
"taxid": 2838133
}
8 changes: 4 additions & 4 deletions src/a/agapanthus_velarivirus/sag/isolate.json
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@@ -1,6 +1,6 @@
{
"id": "sag",
"source_type": "isolate",
"source_name": "19-3005",
"default": false
"id": "sag",
"source_type": "isolate",
"source_name": "19-3005",
"default": false
}
14 changes: 7 additions & 7 deletions src/a/agapanthus_velarivirus/sag/tegAmP6k.json
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22 changes: 11 additions & 11 deletions src/a/agapanthus_virus_a/otu.json
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@@ -1,13 +1,13 @@
{
"_id": "92vh6QpM",
"name": "Agapanthus virus A",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2838150
"_id": "92vh6QpM",
"name": "Agapanthus virus A",
"abbreviation": "",
"schema": [
{
"molecule": "ssRNA+",
"name": "genome",
"required": true
}
],
"taxid": 2838150
}
8 changes: 4 additions & 4 deletions src/a/agapanthus_virus_a/un0/isolate.json
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@@ -1,6 +1,6 @@
{
"id": "un0",
"source_type": "isolate",
"source_name": "19-3004",
"default": true
"id": "un0",
"source_type": "isolate",
"source_name": "19-3004",
"default": true
}
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