fix path to sanity check input (broadinstitute#502)

* fix path to sanity check input * add disable_sanity_check as input * add meta block to wdl
vivbak · Nov 10, 2021 · 8cb1470 · 8cb1470
1 parent 563b5b9
commit 8cb1470
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Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/beta-pipelines/broad/somatic/single_sample/targeted/TargetedSomaticSingleSample.wdl b/beta-pipelines/broad/somatic/single_sample/targeted/TargetedSomaticSingleSample.wdl
@@ -186,4 +186,8 @@ workflow TargetedSomaticSingleSample {
 
     File validate_cram_file_report = BamToCram.validate_cram_file_report
   }
+
+  meta {
+    allowNestedInputs: true
+  }
 }
diff --git a/beta-pipelines/broad/somatic/single_sample/targeted/test_inputs/Plumbing/RP-929.NA12878.json b/beta-pipelines/broad/somatic/single_sample/targeted/test_inputs/Plumbing/RP-929.NA12878.json
@@ -51,5 +51,5 @@
 
   "TargetedSomaticSingleSample.hard_clip_reads": false,
   "TargetedSomaticSingleSample.bin_base_qualities": false,
-  "TargetedSomaticSingleSample.UnmappedBamToAlignedBam.UnmappedBamToAlignedBam.CheckContamination.disable_sanity_check": true
+  "TargetedSomaticSingleSample.UnmappedBamToAlignedBam.CheckContamination.disable_sanity_check": true
 }
-Original file line number
+Diff line change
@@ Expand Up / @@ -186,4 +186,8 @@ workflow TargetedSomaticSingleSample { @@
         File validate_cram_file_report = BamToCram.validate_cram_file_report
       }
+      meta {
+        allowNestedInputs: true
+      }
     }