Skip to content

Commit

Permalink
DOI and citation info included
Browse files Browse the repository at this point in the history
  • Loading branch information
wasimaftab authored Apr 12, 2021
1 parent 03982d1 commit 6875efc
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Pipeline to analyze proteomic dataset for the protocol paper "Mapping proximity networks in yeast mitochondria using BioID coupled to proteomics"
# Pipeline to analyze proteomic dataset for the protocol paper "Mapping proximity networks in yeast mitochondria using BioID coupled to proteomics (DOI: 10.1016/j.xpro.2020.100219)"

### How to run two-group comparison(using LIMMA) code?
* Implementation of LIMMA (Linear Models for Microarray Data), an empirical Bayes method for two group comparision in a proteomic experiment [1].
Expand Down Expand Up @@ -46,7 +46,8 @@
* The network displayed represents Bait-prey undirected network which can be customized depending on the user preference.
* Tested on Windows 10 (64 bit) using Cytoscape 3.7.2.


### Cite this repo
Salvatori, R., Aftab, W., Forne, I., Imhof, A., Ott, M. and Singh, A.P., 2020. Mapping protein networks in yeast mitochondria using proximity-dependent biotin identification coupled to proteomics. STAR protocols, p.100219.

#### Reference:
[1] Kammers, Kai, et al. "Detecting significant changes in protein abundance." EuPA open proteomics 7 (2015): 11-19.

0 comments on commit 6875efc

Please sign in to comment.