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wehale committed May 2, 2024
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18 changes: 16 additions & 2 deletions config.yaml
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docpub:
path: ./doc_pub

# Original Gen Settings
orig:
use: True
name: Original
gen_file_prefix: _orig_
description_prefix: Original

# LLM Settings
oaillm:
use: True
name: OpenAI LLM
name: OpenAI
model: gpt-4-turbo
gen_file_prefix: _oaillm_
description_prefix: OpenAI
prompts: ./prompt/prompts_oai.jsonl

gllm:
use: True
name: Google AI LLM
name: Google AI
model: gemini-pro
gen_file_prefix: _gllm_
description_prefix: GoogleAI
prompts: ./prompt/prompts_gai.jsonl

hfllm:
use: True
name: Hugging Face
model: openai-community/gpt2
gen_file_prefix: _hfllm_
description_prefix: HuggingFace
prompts: ./prompt/prompts_hf.jsonl
113 changes: 44 additions & 69 deletions doc_pub/_gllm_SpellChecker.md
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# GoogleAI: SpellChecker.java

## Description: SpellChecker.java
### Description of the Java Code
### Description of the Java Spell Checker

The provided Java code **implements a spell checker that identifies misspelled words in a text document by comparing them against a dictionary**.
The provided Java source file contains a basic spell checker program that does the following:

**Key Functionality:**
- It identifies misspelled words in a text file.
- It suggests possible corrections for misspelled words.
- It generates alternative spellings by adding, removing, or swapping characters in the misspelled word.

- **Loads a dictionary** from a file into a set of strings.
- **Reads words** from an input text file.
- **Compares each word** to the dictionary.
- **Identifies misspelled words** and stores them along with the line numbers where they occur.
- **Generates possible alternatives** for misspelled words by adding, removing, or exchanging characters.
- **Filters out alternatives** that are not present in the dictionary.
- **Prints a report** listing misspelled words, line numbers, and possible alternatives.
The program uses a dictionary of correctly spelled words to check against the words in the input text file. Misspelled words are stored in a map along with the line numbers where they appeared.

**How it Works:**
The spell checker employs three techniques to generate alternative spellings for misspelled words:

1. The `SpellChecker` class is initialized with the loaded dictionary.
2. The `checkWords` method reads words from the input text file and checks each word against the dictionary. Misspelled words are recorded along with their line numbers.
3. For each misspelled word, the `findAlternatives` method generates possible alternatives and filters out invalid ones.
4. The `main` method loads the dictionary, creates a `SpellChecker` instance, and checks for misspelled words in the input text file.
5. The results are printed, including misspelled words, line numbers, and possible alternatives.
- **addChar**: Adds a character anywhere in the word.
- **removeChar**: Removes a character from anywhere in the word.
- **xchangeChar**: Swaps adjacent characters in the word.

**Usage:**

To use the spell checker, you need to provide two command-line arguments:

1. Input text file containing the text to be checked.
2. Dictionary file containing the list of words to use for checking.
The program outputs the misspelled words along with the lines where they appeared, as well as a list of possible corrections.

The program will analyze the input text file, identify misspelled words, and suggest possible alternatives.
**Overall, this program is a basic but functional spell checker that demonstrates string manipulation and data structure usage in Java.**

(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)

## Functions: SpellChecker.java
### Function and Method Documentation
### Function and Method Documentation for Java Spell Checker

**Class:** `SpellChecker`

**Constructor:**

- `SpellChecker(Set<String> dic)`: Initializes the `SpellChecker` with the provided dictionary.

**Methods:**

- `checkWords(String inFile)`:
- **Reads** words from the input file specified by `inFile`.
- **Checks** each word against the dictionary and identifies misspelled words.
- **Stores** misspelled words and their line numbers in the `misspelled` map.
- **Prints** the list of misspelled words, the lines where they occur, and possible alternatives.

- `findAlternatives(String word)`:
- **Attempts** to find alternative spellings for a given misspelled word.
- **Generates** possible alternatives by adding, removing, or exchanging characters in the word.
- **Filters out** alternatives that are not present in the dictionary.
- **Returns** a set of valid alternatives for the misspelled word.

- `addChar(String aWord)`:
- **Generates** alternatives by adding a character at each possible position in the word.

- `removeChar(String aWord)`:
- **Generates** alternatives by removing a character from each position in the word.

- `xchangeChar(String aWord)`:
- **Generates** alternatives by exchanging adjacent characters in the word.
- **checkWords:**
- Does: Analyzes a text file for misspelled words and reports them along with possible corrections.
- **findAlternatives:**
- Does: Generates a set of possible alternative spellings for a misspelled word using character addition, removal, and swapping techniques.
- **addChar:**
- Does: Generates a list of alternative spellings by adding a character anywhere in the misspelled word.
- **removeChar:**
- Does: Generates a list of alternative spellings by removing a character from anywhere in the misspelled word.
- **xchangeChar:**
- Does: Generates a list of alternative spellings by swapping adjacent characters in the misspelled word.

**Helper Method:**

- `loadDictionary(Set<String> dic, String dictFile)`:
- **Loads** a dictionary from a file into the provided `dic` set.
- **loadDictionary:**
- Does: Loads a dictionary of correctly spelled words from a file into a `Set<String>`.

**Main Method:**
**Usage:**

- `main(String[] args)`:
- **Loads** the dictionary from the specified file.
- **Creates** a `SpellChecker` instance using the loaded dictionary.
- **Checks** for misspelled words in the input file provided.
- **Prints** the results, including misspelled words, line numbers, and possible alternatives.
- The `SpellChecker` class is instantiated with a dictionary of correctly spelled words.
- The `checkWords` method is called to analyze a text file for misspelled words.
- The `findAlternatives` method is used to generate possible corrections for misspelled words.

(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)

## Security Vulnerabilities: SpellChecker.java
### Possible Issues in the Java Code
### Possible Issues in Java Spell Checker Source

The provided Java spell checker source has the following possible issues:

**Exceptions:**

- The `checkWords` method **does not handle** `FileNotFoundException` when trying to read the input text file. This could cause the program to crash if the file is not found.
- The `loadDictionary` method **does not handle** `FileNotFoundException` when trying to read the dictionary file. This could cause the program to crash if the file is not found.
- The `checkWords` method throws a `FileNotFoundException` if the input text file cannot be found. This exception is not handled within the method, so it will propagate to the caller.
- The `loadDictionary` method also throws a `FileNotFoundException` if the dictionary file cannot be found. This exception is not handled within the method, so it will propagate to the caller.

**Security Vulnerabilities:**

- The code **does not perform any input validation** on the input text file or the dictionary file. This could allow an attacker to provide malicious input that could cause the program to behave unexpectedly or crash.
- The program does not perform any input validation on the input text file or the dictionary file. This means that malicious users could provide specially crafted input files that could cause the program to crash or behave unexpectedly.

**Other Issues:**

- The code **does not handle duplicate words** in the input text file. If a word appears multiple times, it will only be reported once in the output.
- The code **does not provide any way to correct** misspelled words. It only identifies and reports them.
- The program does not handle duplicate words in the input text file. If a misspelled word appears multiple times, it will only be reported once along with the first line number where it appeared.
- The program does not provide any way to correct the misspelled words. It only reports the misspelled words and possible corrections.

**Recommendations:**

- Handle `FileNotFoundException` in the `checkWords` and `loadDictionary` methods to prevent the program from crashing if the input or dictionary file is not found.
- Implement input validation to prevent malicious input from causing problems.
- Consider handling duplicate words in the input text file by reporting all occurrences or providing a count of occurrences.
- Add a feature to allow users to correct misspelled words.
- The program should handle the `FileNotFoundException`s thrown by the `checkWords` and `loadDictionary` methods to prevent the program from crashing if the input files cannot be found.
- The program should perform input validation on the input text file and the dictionary file to prevent malicious users from providing specially crafted input files.
- The program should handle duplicate words in the input text file by reporting all the line numbers where each misspelled word appears.
- The program could be extended to provide a way to correct the misspelled words, such as by allowing the user to select a correction from a list of suggestions or by providing a way to manually enter the correct spelling.

(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)
136 changes: 43 additions & 93 deletions doc_pub/_gllm_calc.md
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# GoogleAI: calc.c

## Description: calc.c
### Description of the Provided Source File
### The provided source file is a C program that multiplies two large integers represented as strings.

The provided source file is a C program that multiplies two arbitrary-precision integers represented as strings. It does this by using a basic multiplication algorithm, converting between characters and integers using custom functions, and accumulating partial results.
It does this by using a naive multiplication algorithm, where each digit of the first number is multiplied by each digit of the second number, and the results are added together.

The program has the following key components:
The program takes two command-line arguments, which are strings representing numbers, and calls the `multiply` function to calculate their product.

1. **Conversion Functions**:
- `ctoi(char c)`: Converts a character representing a digit ('0' to '9') to its corresponding integer value.
- `itoc(int i)`: Converts an integer representing a digit (0 to 9) to its corresponding character.
The `multiply` function works as follows:

2. **Addition Function**:
- `add_buffers(char *bufA, char *bufB)`: Adds two character buffers representing numbers, taking into account any carryover from previous additions.
1. It initializes a buffer `buf` to store the result of multiplying each digit of `a` by each digit of `b`.
2. It initializes a buffer `retBuf` to store the final result.
3. It enters a loop that iterates over each digit of `a`.
- For each digit of `a`, it clears `buf` and sets it to all zeros.
- It sets a carry variable to 0.
- It enters a nested loop that iterates over each digit of `b`.
- For each digit of `b`, it calculates the product of the current digits of `a` and `b` and adds the carry from the previous iteration.
- It calculates the remainder of the product and the carry by dividing the product by 10.
- It stores the remainder in the appropriate position in `buf`.
- If this is the last digit of `b` and there is a carry left, it stores the carry in the next position in `buf`.
4. It calls the `add_buffers` function to add the contents of `buf` to `retBuf`.
5. Finally, it returns the contents of `retBuf` as the product of `a` and `b`.

3. **Multiplication Function**:
- `multiply(char* a, int lenA, char *b, int lenB)`: Multiplies two strings representing integers, using a basic multiplication algorithm. It performs digit-by-digit multiplication and accumulates the results in a buffer.
The program then prints the product of the two input numbers to the console.

4. **Main Function**:
- Parses the input strings from command-line arguments, calculates the length of the strings, multiplies them using the `multiply` function, and prints the result.
The time complexity of this algorithm is O(n^2), where n is the length of the input strings.

The program works by first converting the input strings to integers using the `ctoi` function. Then, it uses the `multiply` function to perform multiplication, which involves digit-by-digit multiplication and accumulation of partial results. The `add_buffers` function is used to add these partial results, considering any carryover. Finally, the program converts the result back to a string using the `itoc` function and prints it.

In summary, this program demonstrates the basic principles of multiplication of large numbers, with custom string manipulation functions for converting between characters and integers, and a simple algorithm for multiplication.

(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)

## Functions: calc.c
### Function and Method Documentation

**Function: `ctoi(char c)`**

**Description:** Converts a character representing a digit ('0' to '9') to its corresponding integer value.

**Example:**
```c
ctoi('5') == 5
```
**Function: `itoc(int i)`**
**Description:** Converts an integer representing a digit (0 to 9) to its corresponding character.
**Example:**
```c
itoc(7) == '7'
```

**Function: `add_buffers(char *bufA, char *bufB)`**
### Function documentation:

**Description:** Adds two character buffers representing numbers, taking into account any carryover from previous additions.
#### `int ctoi(char c)`

**Example:**
```c
char bufA[] = {'1', '2', '3'};
char bufB[] = {'4', '5', '6'};
add_buffers(bufA, bufB); // bufA now contains {'5', '7', '9'}
```
Converts a character representing a digit to its corresponding integer value.

**Function: `multiply(char* a, int lenA, char *b, int lenB)`**
#### `char itoc(int i)`

**Description:** Multiplies two strings representing integers, using a basic multiplication algorithm. It performs digit-by-digit multiplication and accumulates the results in a buffer.
Converts an integer to its corresponding character representing a digit.

**Example:**
```c
multiply("123", 3, "456", 3) == "56088"
```
#### `void add_buffers(char *bufA, char *bufB)`

**Function: `main()`**
Adds two character buffers representing numbers and stores the result in the first buffer.

**Description:** Parses the input strings from command-line arguments, calculates the length of the strings, multiplies them using the `multiply` function, and prints the result.
#### `char *multiply(char* a, int lenA, char *b, int lenB)`

**Example:**
```c
int main(int argc, char *argv[]) {
char *s1 = argv[1];
char *s2 = argv[2];
Multiplies two strings representing numbers using a naive algorithm.

int lenS1 = strlen(s1);
int lenS2 = strlen(s2);
#### `int main(int argc, char *argv[])`

char *result = multiply(s1, lenS1, s2, lenS2);
Takes two command-line arguments, which are strings representing numbers, and calls the `multiply` function to calculate their product.

printf("%s * %s = %s\n", s1, s2, result);
### Method documentation:

free(result);
This source file does not contain any methods.

return 0;
}
```
(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)

## Security Vulnerabilities: calc.c
### Possible Issues in the Source
The provided source code does not have any obvious exceptions or security vulnerabilities. However, there are a few potential issues to consider:
**1. Integer Overflow:**
The `multiply` function does not check for integer overflow when multiplying the digits. If the result of a multiplication exceeds the maximum value that can be represented by an integer, the program may produce incorrect results.
**2. Incorrect Input:**
The program assumes that the input strings represent valid integers. If the input strings contain non-digit characters or are not in a valid integer format, the program may produce incorrect results or crash.
**3. Memory Management:**
The `multiply` function dynamically allocates memory for the result buffer. If the multiplication result is very large, it is possible that the program may run out of memory and crash.
**4. Lack of Error Handling:**
### Possible issues found in the source:

The program does not handle errors that may occur during input parsing or memory allocation. If an error occurs, the program may crash without providing any useful information to the user.
- **Integer overflow:** The `multiply` function does not check for integer overflow when multiplying the digits of the input numbers. This could lead to incorrect results if the product of two digits is greater than 9.
- **Buffer overflow:** The `multiply` function does not check if the result of multiplying two digits will fit in the allocated buffer. This could lead to a buffer overflow and undefined behavior.
- **Security vulnerabilities:** The program does not perform any input validation on the command-line arguments. This could allow an attacker to pass in malicious input that could cause the program to crash or execute arbitrary code.

**Recommendations:**
To address these issues, the program should:

To address these issues, the program can be improved by:
- Check for integer overflow when multiplying the digits of the input numbers.
- Check if the result of multiplying two digits will fit in the allocated buffer.
- Perform input validation on the command-line arguments to prevent malicious input.

- Adding checks for integer overflow in the `multiply` function.
- Validating the input strings to ensure that they represent valid integers.
- Using proper memory management techniques to prevent memory leaks and crashes.
- Adding error handling to catch and report errors that may occur during input parsing or memory allocation.
Additionally, the program could be made more efficient by using a more efficient multiplication algorithm, such as Karatsuba multiplication or the Fast Fourier Transform (FFT).

(Generated by doc-gen using Google AI LLM gemini-pro)
(Generated by doc-gen using Google AI gemini-pro)
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