Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson cor…

🧬 gget enables efficient querying of genomic reference databases

RF model and functions to estimate tumor purity using methylation data

Machine Learning Automation with TPOT, published by Packt

cython + htslib == fast VCF and BCF processing

WDL tasks for commonly used BFX tools

The next version of bwa-mem

SDK for GPU accelerated genome assembly and analysis

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.

cuML - RAPIDS Machine Learning Library

Viscello for Visualization of Single Cell Data

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

A game theoretic approach to explain the output of any machine learning model.

Data Analysis Baseline Library

An unsupervised transfer learning approach for rare disease transcriptomics

Tools for working with BUS files

The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

Deep Embedding for Single-cell Clustering

A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

Common Workflow Language reference implementation

Melbourne Bioinformatics documentation in markdown format

Deep neural networks without the learning cliff! Classifiers and regressors compatible with scikit-learn.

This repository includes educational materials on machine learning and a basic example machine learning analysis pipeline. These materials were originally developed for a workshop series at the Uni…

PredictionIO, a machine learning server for developers and ML engineers.

Multivariate imputation and matrix completion algorithms implemented in Python

A recommender system built for book lovers.

OpenML AutoML Benchmarking Framework

HLA-II ligand predictor.