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Commits on Oct 21, 2014

• r941: set a min length for 3rd-round seeding

  lh3

  committed
  60b7284

Commits on Oct 20, 2014

• r929: added simplified LAST-like seeding

  lh3

  committed
  038af2a

• code backup

  lh3

  committed
  25d4551

Commits on Aug 25, 2014

• r809: new strategy for the -a mode

  lh3

  committed
  b5cba25

Commits on May 2, 2013

• Reduce dependency on utils.h - new malloc wrapping scheme.

  Show description for 96e445d
  

  Rob Davies

  committed
  96e445d

Commits on Apr 11, 2013

• Merge branch 'master' into master_fixes. Merged up to master r375.

  Show description for 90ecd34
  

  Rob Davies

  committed
  90ecd34

Commits on Apr 9, 2013

• fixed an issue caused by a Mac/Darwin bug

  Show description for d64eaa8
  lh3

  committed
  d64eaa8

Commits on Mar 1, 2013

• Merge branch 'master' into master_fixes

  Show description for 3d33ab0
  

  Rob Davies

  committed
  3d33ab0

Commits on Feb 26, 2013

• cleanup bwt_occ()

  lh3

  committed
  aa92c72

• move bwt_invPsi() from bwt.h to bwt.c

  lh3

  committed
  80e1137

• removed an unnecessary condition

  lh3

  committed
  fd67064

• simplified bwt_occ4() a little

  lh3

  committed
  264d5e4

• code backup

  lh3

  committed
  c848b44

• code backup: less dependent on gcc optimization

  lh3

  committed
  174fe0f

Commits on Feb 22, 2013

• minor code clean up

  Show description for f122fad
  lh3

  committed
  f122fad

Commits on Feb 1, 2013

• typo in comments

  lh3

  committed
  abc675f

• no effective changes

  lh3

  committed
  86f2e13

Commits on Jan 31, 2013

• move smem iterators to bwamem.{c,h}

  lh3

  committed
  91debf4

• a bit refactoring for further changes

  lh3

  committed
  5a4a0c4

• bugfix: min_intv not working in SMEM

  lh3

  committed
  6de7488

• fixed a couple of unimportant bugs in SMEM

  lh3

  committed
  543c719

• preparation for further changes

  lh3

  committed
  6641788

Commits on Dec 16, 2012

• Use wrapper functions to catch system errors

  Show description for b081ac9
  

  Rob Davies

  committed
  b081ac9

Commits on Jun 25, 2012

• Do not inline functions used externally

  Show description for 84d34e1
  sjackman

  committed
  84d34e1

Commits on Nov 25, 2011

• fixed a deadlock; SMEM iterator

  

  Heng Li

  committed
  150bfbd

Commits on Nov 24, 2011

• perhaps improves samse/sampe

  

  Heng Li

  committed
  eeedda1

Commits on Nov 2, 2011

• fixed a typo

  

  Heng Li

  committed
  4083fe9

Commits on Oct 31, 2011

• throw an error if insufficient memory during index

  

  Heng Li

  committed
  673ae4a

Commits on Oct 25, 2011

• forward-backward search seems working

  

  Heng Li

  committed
  f56edd0

• backup the current debugging code; more changes

  

  Heng Li

  committed
  7626595

• added bidirectional bwt; seems buggy

  

  Heng Li

  committed
  22c2252

Commits on Oct 20, 2011

• fixed a bug in 2occ4()

  

  Heng Li

  committed
  b7e8c4c

Commits on Oct 19, 2011

• make changes to bwt.c

  

  Heng Li

  committed
  c948c64

Commits on Jan 14, 2011

• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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