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fastbook Public
Forked from fastai/fastbookThe fastai book, published as Jupyter Notebooks
Jupyter Notebook Other UpdatedMay 27, 2022 -
janggu_usecases Public
Examples for deep learning in genomics using Janggu
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bplda Public
Latent Dirichlet allocation fitted via loopy belief propagation
Python GNU General Public License v3.0 UpdatedMay 10, 2021 -
CoolBox Public
Forked from GangCaoLab/CoolBoxJupyter notebook based genomic data visualization toolkit.
Python GNU General Public License v3.0 UpdatedMar 23, 2021 -
awesome-expression-browser Public
Forked from federicomarini/awesome-expression-browser😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
MIT License UpdatedFeb 24, 2021 -
nmvae-experiments Public
Forked from pinellolab/scATAC-benchmarkingBenchmarking computational single cell ATAC-seq methods
Jupyter Notebook MIT License UpdatedSep 18, 2020 -
loompy Public
Forked from linnarsson-lab/loompyPython implementation of the Loom file format - http://loompy.org
Python BSD 2-Clause "Simplified" License UpdatedJul 28, 2020 -
mimic-code Public
Forked from MIT-LCP/mimic-codeMIMIC Code Repository: Code shared by the research community for the MIMIC-III database
Jupyter Notebook MIT License UpdatedJul 10, 2020 -
motifcounter Public
R package for identifying motif matches and motif enrichment in DNA sequences
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cisTopic Public
Forked from aertslab/cisTopiccisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
R UpdatedNov 20, 2019 -
SnapTools Public
Forked from r3fang/SnapToolsA module for working with snap files in Python
Python Apache License 2.0 UpdatedSep 4, 2019 -
hmmlearn Public
Forked from hmmlearn/hmmlearnHidden Markov Models in Python, with scikit-learn like API
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 24, 2019 -
pytorch-SkipGram Public
Forked from blackredscarf/pytorch-SkipGramImplementing Skip-gram Negative Sampling with pytorch
Python Apache License 2.0 UpdatedAug 31, 2018 -
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galaxytools Public
Forked from bgruening/galaxytools🔬📚 Galaxy Tool wrappers
HTML UpdatedMar 7, 2018 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 31, 2018 -
tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedJan 29, 2018 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 23, 2018 -
htseq Public
Forked from simon-anders/htseqHTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
C++ GNU General Public License v3.0 UpdatedDec 18, 2017 -
cookiecutter-beamer Public
Template for beamer presentation
TeX GNU General Public License v2.0 UpdatedNov 22, 2017 -
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cookiecutter-snakemake-analysis-pipeline Public
Forked from xguse/cookiecutter-snakemake-analysis-pipelineA cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
Python MIT License UpdatedNov 13, 2017 -
SpreedictorMPowerParkinson Public
This project was used for participating in the MPower Subchallenge of the Parkinson's disease digital biomarker DREAM challenge
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SpreedictorLDopaParkinson Public
This project was used for participating in the Subchallenges 2.1-2.3 of the Parkinson's disease digital biomarker DREAM challenge
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