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Starred repositories

68 results for source starred repositories written in Shell
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Quickly create and run optimised Windows, macOS and Linux virtual machines

Shell 11,538 505 Updated Mar 7, 2025

WireGuard VPN installer for Linux servers

Shell 8,937 1,410 Updated Jan 26, 2025
Shell 8,320 1,148 Updated Mar 6, 2025

A conda-forge distribution.

Shell 7,188 374 Updated Mar 1, 2025

Manage your Java environment

Shell 6,042 386 Updated Jun 11, 2024

📖 Unofficial WireGuard Documentation: Setup, Usage, Configuration, and full example setups for VPNs supporting both servers & roaming clients.

Shell 4,746 325 Updated Dec 21, 2024

A Microsoft Windows® USB installation media preparer for GNU+Linux

Shell 2,270 124 Updated Sep 28, 2023

📥 Homebrew (un)installer

Shell 2,264 1,038 Updated Mar 6, 2025

Conda recipes for the bioconda channel.

Shell 1,699 3,389 Updated Mar 6, 2025

shUnit2 is a xUnit based unit test framework for Bourne based shell scripts.

Shell 1,643 209 Updated Oct 22, 2024

This Windows Batchscript helps setup a Mingw-w64 compiler environment for building ffmpeg and other media tools under Windows.

Shell 1,611 270 Updated Mar 3, 2025

R configurations for Docker

Shell 1,471 271 Updated Feb 28, 2025

text window manager, shell multiplexer, integrated DevOps environment

Shell 1,296 125 Updated May 2, 2024

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Shell 938 187 Updated Mar 1, 2025

An OSX print to pdf-file printer driver

Shell 905 83 Updated Sep 7, 2024

An X11 server and client libraries for macOS

Shell 873 55 Updated Jun 5, 2023

A "batteries-included" distribution of ImageJ 🔋

Shell 804 240 Updated Mar 5, 2025
Shell 751 532 Updated Jul 27, 2022

Cytoscape: an open source platform for network analysis and visualization

Shell 598 142 Updated Nov 18, 2024

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Shell 432 184 Updated Nov 22, 2024

Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.

Shell 432 187 Updated Mar 4, 2025

the pangenome graph builder

Shell 417 45 Updated Feb 12, 2025

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

Shell 415 194 Updated Jul 28, 2023

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Shell 340 80 Updated Dec 14, 2024

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

Shell 321 285 Updated Dec 21, 2018

k-mer based assembly evaluation

Shell 302 21 Updated Jun 28, 2024

bioBakery tools for meta'omic profiling

Shell 272 75 Updated Oct 19, 2024

Run Rstudio Server in a conda environment

Shell 240 50 Updated Jun 12, 2024

🆔 Scan contig files against PubMLST typing schemes

Shell 217 48 Updated Oct 28, 2022

A user-friendly workflow for phylogenomics

Shell 208 26 Updated Feb 21, 2025
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