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Edits for "about" and "project" sections
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| Bert Droesbeke: | ||
| git: bedroesb | ||
| email: [email protected] | ||
| orcid: 0000-0003-0522-5674 | ||
| orcid: 0000-0003-0522-5674 | ||
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| Johan Gustafsson: | ||
| git: supernord | ||
| orcid: 0000-0002-2977-5032 | ||
| role: product owner | ||
| affiliation: Australian BioCommons / University of Melbourne | ||
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| Frederik Coppens: | ||
| git: frederikcoppens | ||
| role: product owner | ||
| affiliation: VIB | ||
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| Carole Goble: | ||
| git: CaroleGoble | ||
| orcid: 0000-0003-1219-2137 | ||
| role: product owner | ||
| affiliation: University of Manchester | ||
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| Finn Bacall: | ||
| git: fbacall | ||
| role: lead developer | ||
| affiliation: University of Manchester | ||
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| - title: "Production instance" | ||
| url: https://workflowhub.eu/ | ||
| - title: "Sandbox instance" | ||
| url: https://dev.workflowhub.eu/ | ||
| - title: "Source code" | ||
| url: https://github.com/seek4science/seek | ||
| - title: "Documentation" | ||
| url: docs/ | ||
| - title: "Outreach and Publications" | ||
| url: project/outreach | ||
| - title: "Roadmap" | ||
| url: project/roadmap |
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| ## Topnav single links | ||
| ## if you want to list an external url, use external_url instead of url. the theme will apply a different link base. | ||
| subitems: | ||
| - title: Home | ||
| url: / | ||
| - title: About | ||
| url: /project/ | ||
| url: / | ||
| - title: Documentation | ||
| url: /docs/ |
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| <div class="row row-cols-1 row-cols-md-2 row-cols-lg-{{ include.col | default: 2 }} gy-2 gx-4 my-4 navigation-tiles"> | ||
| {%- for item in site.data.tiles %} | ||
| {%- if item.title %} | ||
| <div class="col d-grid"> | ||
| <a role="button" class="btn btn-secondary text-light font-size-sm py-4 fs-3" href="{{ item.url | relative_url }}">{{item.title}}</a> | ||
| </div> | ||
| {%- endif %} | ||
| {%- endfor %} | ||
| </div> |
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| --- | ||
| title: WorkflowHub project | ||
| toc: false | ||
| toc: true | ||
| permalink: / | ||
| # There are special sidebar rules for the index page in layouts/default.html | ||
| hide_sidebar: true | ||
| sidebar: true | ||
| --- | ||
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| [WorkflowHub](https://workflowhub.eu/) is a FAIR **workflow registry** sponsored by the European RI Cluster EOSC-Life, the European Research Infrastructure ELIXIR and [multiple EU-wide projects](/project/acknowledgements/#funding). It is workflow management system agnostic: workflows may remain in their native repositories in their native forms. | ||
| ## About | ||
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| This website describes the open source **project** for developing and running [WorkflowHub](https://workflowhub.eu/). | ||
| This website describes the open source project for developing and running [**WorkflowHub**](https://workflowhub.eu/): a FAIR registry for describing, sharing and publishing scientific computational workflows. The registry is sponsored by the European RI Cluster EOSC-Life, the European Research Infrastructure ELIXIR, and [multiple EU-wide projects](/project/acknowledgements/#funding). | ||
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| For more details, see [About WorkflowHub](/project), [FAIR Computational Workflows](https://workflows.community/groups/fair/), [Outreach and Publications](/project/outreach). | ||
| [WorkflowHub](https://workflowhub.eu): | ||
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| For any kind of questions or suggestions on using WorkflowHub, feel free to join our [community](/project/community)! | ||
| * Is a **domain-agnostic** workflow registry designed around [FAIR principles](https://workflows.community/groups/fair/). | ||
| * Is **workflow management system agnostic**: workflows may remain in their native repositories in their native forms. | ||
| * Provides features such as community spaces, collections, versioning and snapshots, and contributor credit. | ||
| * Allows workflows to be FAIR, citable, have managed metadata profiles, and be openly available for review and analytics. | ||
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| ## Documentation | ||
| In addition: | ||
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| * Workflows are packaged, registered, downloaded and exchanged as [workflow-centric Research Objects](/Workflow-RO-Crate/) using the [RO-Crate](https://w3id.org/ro/crate) specification, with test and example data, managed metadata profiles, citations and more. | ||
| * A [schema.org](https://schema.org/) based Bioschemas profile describes the metadata about a workflow and use of the [Common Workflow Language](https://www.commonwl.org/) is encouraged, providing a canonical description of the workflow itself. | ||
| * Popular workflow management systems such as [Galaxy](https://galaxyproject.org/), [Nextflow](https://nextflow.io/), and [Snakemake](https://snakemake.readthedocs.io/) are working with the Hub to seamlessly and automatically support object packaging, registration and exchange. | ||
| * In addition to its own [APIs](https://workflowhub.eu/api), WorkflowHub supports community registry standards and services such as [GA4GH TRS](https://about.workflowhub.eu/TRS/) and [ELIXIR-AAI](https://elixir-europe.org/services/compute/aai) authentication, and current work integrates with the [LifeMonitor workflow testing](https://lifemonitor.eu/) service. | ||
| * WorkflowHub is mainly sponsored by the European RI Cluster [EOSC-Life](https://www.eosc-life.eu/), the European Research Infrastructure [ELIXIR](https://elixir-europe.org/) and [EuroScienceGateway](http://eurosciencegateway.eu/) (see [full list of acknowledgements](/project/acknowledgements/#funding)). | ||
| * The [WorkflowHub Club](/project/community/) open community works together to continuously co-develop the Hub. | ||
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| For more details, see [FAIR Computational Workflows](https://workflows.community/groups/fair/), [Outreach and Publications](project/outreach). | ||
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| For any kind of questions, or suggestions on using WorkflowHub, feel free to join our [community](#community)! | ||
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| ## Did you know? | ||
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| * The first beta-release was in Sept 2020, | ||
| * Production-release was in September 2022, | ||
| * The WorkflowHub now holds over [700 workflows](https://workflowhub.eu/workflows), including 49 curated [COVID-19 workflows](https://covid19.workflowhub.eu/), | ||
| * It is a listed resource of the European [COVID19 Data Portal](https://www.covid19dataportal.org/), and is a [EOSC Data Source](https://marketplace.eosc-portal.eu/datasources/eosc.elixir-uk.5126ffcc8e23f65bbbe219d36128f2c8). | ||
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| ## Citation | ||
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| {% include citation.md %} | ||
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| {% include callout.html type="tip" content="See also [publication and outreach](/project/outreach) for more specific work." %} | ||
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| * [Documentation & Quick Start guide](docs/) (See also _Detailed Documentation_) | ||
| * [Guide to using WorkflowHub](docs/guide-to-using-workflowhub/) | ||
| * [Developer docs](developer/) | ||
| * Tutorial vidoes: | ||
| - [Make your workflows findable and citable](https://www.youtube.com/watch?v=2kGKxaPuQN8) ([slides](https://doi.org/10.5281/zenodo.7787488)) | ||
| - [WorkflowHub ask-me-anything](https://workflowhub.eu/presentations/19?version=1) tutorial session | ||
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| ## Project resources | ||
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| * **Production instance**: <https://workflowhub.eu/> | ||
| * **Sandbox instance**: <https://dev.workflowhub.eu/> (use for testing; occasionally wiped) | ||
| * **Source code**: [seek4science/seek](https://github.com/seek4science/seek) | ||
| * **API documentation**: <https://workflowhub.eu/api> | ||
| * **[Outreach and Publications](/project/outreach/)** | ||
| * **EOSC-Life Deliverable 2.3**: <https://doi.org/10.5281/zenodo.7886545> | ||
| * **Tasks**: | ||
| * [WorkflowHub roadmap](/project/roadmap) (deprecated -- now managed in Trello) | ||
| * WorkflowHub implementation <https://github.com/seek4science/seek/projects/3> (SEEK) | ||
| * General WorkflowHub <https://github.com/workflowhub-eu/about/issues> | ||
| {% include tiles-simple.html col = "2" %} | ||
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| * **Tutorial videos:** | ||
| * [Make your workflows findable and citable](https://www.youtube.com/watch?v=2kGKxaPuQN8) ([slides](https://doi.org/10.5281/zenodo.7787488)) | ||
| * [WorkflowHub ask-me-anything](https://workflowhub.eu/presentations/19?version=1) tutorial session | ||
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| ## Get involved | ||
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| ### Community | ||
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| While WorkflowHub is largely developed as a collaboration between [several projects](/project/acknowledgements), any contributors are welcome to join our **open community**. | ||
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| Anyone can [join the WorkflowHub club](https://github.com/workflowhub-eu/about/issues/1)! Either sign up on GitHub [issue #1](https://github.com/workflowhub-eu/about/issues/1) or join the [next bi-weekly Zoom call](https://s.apache.org/workflowhub-minutes) and introduce yourself. | ||
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| * **When:** Alternate Wednesdays 10:00 current UK time zone / 11:00 current Central European time zone | ||
| * **Agenda, telcon details and minutes:** <https://s.apache.org/workflowhub-minutes> | ||
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| See the list of WorkflowHub Club members on the [acknowledgements page](/project/acknowledgements). | ||
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| For asynchronous communication, see also: | ||
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| * **Mailing list**: [`workflowhub😊elixir-europe.org`](https://lists.elixir-europe.org/mailman/listinfo/workflowhub_elixir-europe.org) ([subscribe](https://lists.elixir-europe.org/mailman/listinfo/workflowhub_elixir-europe.org)/[archive](https://mail.elixir-europe.org/pipermail/workflowhub_elixir-europe.org/)) | ||
| * **Slack chat**: [#workflows on seek4science.slack.com](https://seek4science.slack.com/archives/CPLLVV94L) ([join](https://join.slack.com/t/seek4science/shared_invite/zt-csqh94qb-kf~kFbZxuHl1Hpxhbc8avw)) | ||
| * [Google Drive](https://drive.google.com/drive/folders/1_bZ63W4oRtWL5OnWJNYvE4u3A27VyGGe) | ||
| (to request write-access, ask in Slack channel) | ||
| * **Slides/posters** (for complete list, see [Outreach](/project/outreach/)): | ||
| * [WorkflowHub: FAIR Workflow Registry](https://doi.org/10.5281/zenodo.7323471). Justin Clark-Casey et al, EOSC Symposium 2022, 2022-11-14 | ||
| * [WorkflowHub – a FAIR registry for workflows](https://doi.org/10.7490/f1000research.1118984.1). Carole Goble, ELIXIR All Hands 2022 | ||
| * [WorkflowHub - a registry for workflows](https://doi.org/10.5281/zenodo.4012124). Carole Goble, ECCB 2020, 2020-09-02 | ||
| * [Poster: The WorkflowHub, a registry for Life Science Workflows](https://workflowhub.eu/presentations/1). Ambarish Kumar, ISMB, 2020-07-13 | ||
| * [WorkflowHub Introduction slides](https://drive.google.com/open?id=1hfBAjjRnL9jGoxHEvq66Wo-wuKqouR3C). Carole Goble, 2020-03-25 | ||
| * [Google Drive](https://drive.google.com/drive/folders/1_bZ63W4oRtWL5OnWJNYvE4u3A27VyGGe): to request write-access, ask in Slack channel | ||
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| ## Community | ||
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| Regular meeting: **WorkflowHub Club** - all welcome! | ||
| ### Development | ||
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| Anyone is welcome to join the bi-weekly [WorkflowHub Club](/project/community) calls using Zoom. | ||
| Created as part of the [EOSC-Life](https://www.eosc-life.eu) WP2 [Tools Collaboratory](https://github.com/eosc-life/tools-collaboratory-roadmap), WorkflowHub is in production but still under active development. See the [roadmap page](/project/roadmap) for a list of in-flight and future development activities. | ||
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| * When: Alternate Wednesdays 10:00 current UK time zone / 11:00 current Central European time zone | ||
| * Agenda, telcon details and minutes: <https://s.apache.org/workflowhub-minutes> | ||
| You can also see a complete list of contributors on the [acknowledgements](/project/acknowledgements) page. | ||
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| ### Contact Us | ||
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| The production instance <https://workflowhub.eu/> is hosted by [eScience Lab](https://esciencelab.org.uk/) at [The University of Manchester](https://www.manchester.ac.uk/) led by professor [Carole Goble](https://research.manchester.ac.uk/en/persons/carole.goble). | ||
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| * [Provide feedback or ask questions](https://workflowhub.eu/home/feedback) | ||
| * [Contribute to WorkflowHub club](#community) | ||
| * [Report an issue](https://workflowhub.eu/home/report_issue) (public GitHub), or: | ||
| - Contact `workflowhub.eu` system administrators: <[email protected]> | ||
| - Report [Code of Conduct](https://github.com/workflowhub-eu/about/blob/master/CODE_OF_CONDUCT.md) concerns: <[email protected]> | ||
| * Academic collaborations: <[email protected]> | ||
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| ## WfCommons and WorkflowHub | ||
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| Note that the US-based [WfCommons](https://wfcommons.org/), a Python-based framework for enabling scientific workflow research and development, was previously [called "WorkflowHub"](https://doi.org/10.1109/WORKS51914.2020.00012). While that framework is not related to our registry workflowhub.eu, this name collision could cause some confusion, so in common agreement with Rafael Ferreira da Silva, their former domain name `workflowhub.org` | ||
| now kindly redirect to our workflow registry <https://workflowhub.eu/>, their framework was renamed to "WfCommons" and moved to <https://wfcommons.org/> and their Python package `workflowhub` was renamed [`wfcommons`](https://pypi.org/project/wfcommons/). | ||
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| See the list of club members on the [acknowledgement](/project/acknowledgements) page. | ||
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| ## Code of conduct | ||
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| This project has a [Code of Conduct](https://github.com/workflowhub-eu/about/blob/master/CODE_OF_CONDUCT.md) to ensure interactions are friendly, respectful and inclusive. You can contact <[email protected]> if you have any concerns or questions. | ||
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| ## Citation | ||
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| {% include citation.md %} | ||
| ## Retention and End-of-Life policy | ||
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| WorkflowHub's sustainability plan is to ensure the availability of its contributions and metadata up to and beyond 2027. If and when the WorkflowHub reaches its end of service after that, the published contributions and metadata will be archived as RO-Crates and made available through a public repository, such as Zenodo, Figshare or another appropriate resource at that time. [DOI registrations](/docs/citable/) will in this case be updated to link to the archived deposits. | ||
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| ## Governance | ||
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| {% include contributor-tiles-all.html custom="Johan Gustafsson, Frederik Coppens, Carole Goble" %} | ||
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| ## Acknowledgements | ||
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| <!-- NOTE: Always update list above AND the acknowledgements.md page --> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,8 @@ | ||
| --- | ||
| title: Citation | ||
| sidebar: false | ||
| --- | ||
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| {% include citation.md %} | ||
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| {% include callout.html type="tip" content="See also [publication and outreach](/project/outreach) for more specific work." %} |
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