ready for test

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "OGU"
-version = "1.99"
+version = "1.992"
 description = "Organelle Genome Utilities"
 keywords = ['plastid', 'mitochondria', 'organelle genome', 'analysis',
     'Bioinformatics']

setup.py

@@ -31,7 +31,7 @@
     python_requires='>=3.8',
     entry_points={'console_scripts': ['OGU = OGU:main', 'ogu = OGU:main']},
     url='https://github.com/wpwupingwp/BarcodeFinder',
-    version='1.99',
+    version='1.992',
     classifiers=[
         'Development Status :: 5 - Production/Stable',
         'Intended Audience :: Developers',

src/OGU/data/kingdoms.csv

@@ -1 +1 @@
-Zilligvirae,Pararnavirae,Shotokuvirae,Viridiplantae,Helvetiavirae,Bamfordvirae,Trapavirae,Sangervirae,Metazoa,Fungi,Orthornavirae,Heunggongvirae,Loebvirae
+Helvetiavirae,Bamfordvirae,Pararnavirae,Heunggongvirae,Trapavirae,Viridiplantae,Orthornavirae,Shotokuvirae,Metazoa,Loebvirae,Zilligvirae,Sangervirae,Fungi

src/OGU/data/phyla.csv

@@ -1 +1 @@
-Candidatus Undinarchaeota,Candidatus Fraserbacteria,Arthropoda,Candidatus Fervidibacterota,Vulcanimicrobiota,Taleaviricota,Acanthocephala,Candidatus Deferrimicrobiota,Acidobacteriota,Candidatus Fischerbacteria,Candidatus Elulimicrobiota,Candidatus Electryoneota,Candidatus Shapirobacteria,Candidatus Gottesmanbacteria,Candidatus Woykebacteria,Candidatus Pyropristinus,Ignavibacteriota,Calditrichota,Candidatus Moraniibacteriota,Candidatus Borrarchaeota,Candidatus Colwellbacteria,Microcaldota,Candidatus Saccharibacteria,Candidatus Berkelbacteria,Bacillota,Nemertea,Candidatus Paceibacterota,Candidatus Yonathbacteria,candidate division CPR2,Nitrososphaerota,Chlorophyta,Entoprocta,Candidatus Freyarchaeota,Candidatus Idunnarchaeota,Chytridiomycota,Candidatus Nanohalarchaeota,Candidatus Helarchaeota,Gnathostomulida,Aquificota,Candidatus Krumholzibacteriota,Xenacoelomorpha,Candidatus Korarchaeota,Candidatus Lokiarchaeota,Candidatus Cryosericota,Candidatus Giovannonibacteria,Candidatus Cloacimonadota,candidate division CSSED10-310,Candidatus Komeilibacteria,Candidatus Rokuibacteriota,Candidatus Woesearchaeota,Candidatus Geothermarchaeota,Candidatus Sumerlaeota,Candidatus Wukongarchaeota,Nitrospinota,Candidatus Zambryskibacteria,Deinococcota,Candidatus Jorgensenbacteria,Annelida,Tardigrada,Candidatus Hinthialibacterota,Candidatus Bathyarchaeota,Dicyemida,Spirochaetota,Gemmatimonadota,Basidiomycota,Euglenozoa,Candidatus Daviesbacteria,Candidatus Thermoplasmatota,Candidatus Huberarchaea,Candidatus Omnitrophota,Thermodesulfobacteriota,Candidatus Wildermuthbacteria,Candidatus Caldatribacteriota,Foraminifera,Candidatus Staskawiczbacteria,Cyanobacteriota,Candidatus Chisholmbacteria,Chlamydiota,Rhodophyta,candidate division JL-ETNP-Z39,Hemichordata,Chordata,Candidatus Diapherotrites,Candidatus Marsarchaeota,Atribacterota,Gastrotricha,Microsporidia,Zoopagomycota,Cnidaria,Halobacteriota,Pisuviricota,Porifera,Candidatus Nomurabacteria,Cressdnaviricota,Candidatus Goldiibacteriota,Mollusca,Evosea,Thermomicrobiota,Bdellovibrionota,Streptophyta,Candidatus Jacksonbacteria,Candidatus Tagabacteria,Candidatus Spechtbacteria,Peploviricota,Elusimicrobiota,Caldisericota,Candidatus Mcinerneyibacteriota,Candidatus Hydrogenedentota,Campylobacterota,Candidatus Thorarchaeota,Candidatus Kuenenbacteria,Candidatus Glassbacteria,Deferribacterota,Rotifera,Candidatus Gracilibacteria,Candidatus Geoarchaeota,Candidatus Kariarchaeota,Candidatus Lindowbacteria,Candidatus Niyogibacteria,Candidatus Neomarinimicrobiota,Candidatus Azambacteria,Haptophyta,Candidatus Raymondbacteria,Blastocladiomycota,Nitrospirota,Candidatus Parvarchaeota,Sanchytriomycota,Candidatus Effluviviacota,Chaetognatha,Echinodermata,Candidatus Absconditabacteria,Verrucomicrobiota,Candidatus Beckwithbacteria,Candidatus Melainabacteria,candidate division GAL15,Candidatus Firestonebacteria,Candidatus Lloydbacteria,Candidatus Latescibacterota,Euryarchaeota,Candidatus Magasanikiibacteriota,Prasinodermophyta,Tubulinea,Candidatus Gerdarchaeota,Brachiopoda,Candidatus Blackallbacteria,candidate phylum NAG2,Balneolota,Candidatus Sigynarchaeota,candidate division FCPU426,Candidatus Delongbacteria,Loricifera,Candidatus Methylomirabilota,Myxococcota,Candidatus Abawacabacteria,Perkinsozoa,Candidatus Nezhaarchaeota,Bacillariophyta,Candidatus Levyibacteriota,Candidatus Binatota,Phixviricota,Coprothermobacterota,Picozoa,Candidatus Hadarchaeota,Candidatus Brennerbacteria,Candidatus Hydrothermota,Cercozoa,Synergistota,Phoronida,Candidatus Moduliflexota,Bryozoa,Orthonectida,candidate division CPR1,Placozoa,Candidatus Hodarchaeota,Candidatus Aenigmatarchaeota,Candidatus Riflebacteria,Candidatus Roizmanbacteria,Candidatus Hermodarchaeota,Pseudomonadota,Candidatus Portnoybacteria,Discosea,Candidatus Dormiibacterota,Candidatus Friggarchaeota,Dividoviricota,Rhodothermota,Mycoplasmatota,Fornicata,Candidatus Zixiibacteriota,Candidatus Tharpellota,Candidatus Micrarchaeota,Onychophora,Fusobacteriota,Cryptomycota,Candidatus Veblenbacteria,Candidatus Brockarchaeota,Preplasmiviricota,Candidatus Wolfebacteria,Candidatus Abyssubacteria,Candidatus Uhrbacteria,Nanoarchaeota,Candidatus Aminicenantes,Candidatus Culexarchaeota,Candidatus Buchananbacteria,Candidatus Gribaldobacteria,Candidatus Curtissbacteria,Bacteroidota,Parabasalia,Candidatus Microgenomates,Chrysiogenota,Candidatus Wallbacteria,Candidatus Verstraetearchaeota,Candidatus Blackburnbacteria,Candidatus Handelsmanbacteria,Nibbleridia,Olpidiomycota,Duplornaviricota,Candidatus Poribacteria,Candidatus Parcubacteria,Candidatus Auribacterota,Priapulida,Candidatus Altarchaeota,Candidatus Amesbacteria,Thermosulfidibacterota,Kinorhyncha,Candidatus Sifarchaeota,Candidatus Baldrarchaeota,Candidatus Harrisonbacteria,Planctomycetota,Lentisphaerota,Candidatus Woesebacteria,Abditibacteriota,Hemimastigophora,Candidatus Sungiibacteriota,Cycliophora,Candidatus Kaiserbacteria,candidate division WOR-3,Mucoromycota,Candidatus Margulisiibacteriota,Candidatus Gefionarchaeota,Cossaviricota,Candidatus Coatesbacteria,Candidatus Cerribacteria,Nematomorpha,Candidatus Schekmanbacteria,Candidatus Terrybacteria,Candidatus Lernaellota,Nebulidia,Actinomycetota,Candidatus Salinosulfoleibacteria,candidate division CPR3,Candidatus Doudnabacteria,Nucleocytoviricota,Candidatus Muiribacteriota,Kiritimatiellota,Thermoproteota,Ascomycota,Candidatus Yanofskybacteria,Candidatus Bipolaricaulota,Candidatus Vogelbacteria,Apicomplexa,candidate division KD3-62,Candidatus Aerophobetes,Thermotogota,Chloroflexota,Fibrobacterota,Candidatus Edwardsbacteria,Candidatus Adlerbacteria,Kitrinoviricota,Candidatus Liptonbacteria,Candidatus Desantisbacteria,Candidatus Campbellbacteria,Ciliophora,candidate division WWE3,Platyhelminthes,candidate division LCP-89,Ctenophora,Candidatus Ratteibacteria,Armatimonadota,Candidatus Taylorbacteria,Candidatus Wirthbacteria,Candidatus Nealsonbacteria,Thermodesulfobiota,Uroviricota,Chlorobiota,Artverviricota,Candidatus Odinarchaeota,Nematoda,Candidatus Kerfeldbacteria,Candidatus Njordarchaeota,Oomycota,Negarnaviricota,Saleviricota,Candidatus Peregrinibacteria,Lenarviricota,Candidatus Heimdallarchaeota,Candidatus Fermentibacteria,Preaxostyla,Candidatus Andersenbacteria,Endomyxa,Candidatus Ryanbacteria,Candidatus Hydrothermarchaeota,Candidatus Calescamantes,Candidatus Collierbacteria,Candidatus Falkowbacteria,Candidatus Kryptoniota,candidate division ZB2,Heterolobosea,Candidatus Tectomicrobia,Hofneiviricota,Candidatus Lithacetigenota,Candidatus Eisenbacteria,Dictyoglomota
+candidate division CPR1,Deferribacterota,Rhodophyta,Candidatus Campbellbacteria,Candidatus Fermentibacteria,Candidatus Komeiliibacteriota,Candidatus Cloacimonadota,Candidatus Woesebacteria,Candidatus Abawacaibacteriota,Candidatus Fischeribacteriota,Candidatus Shapirobacteria,Verrucomicrobiota,Negarnaviricota,Hofneiviricota,Aquificota,Atribacterota,Preplasmiviricota,Candidatus Hydrothermarchaeota,Candidatus Magasanikiibacteriota,Candidatus Altarchaeota,Discosea,Kiritimatiellota,Candidatus Melainabacteria,Chlorobiota,Nanoarchaeota,Candidatus Tagaibacteriota,Caldisericota,Nucleocytoviricota,Bacillariophyta,Planctomycetota,Candidatus Huberarchaea,Candidatus Aminicenantota,Candidatus Wukongarchaeota,Candidatus Fraseribacteriota,Phixviricota,Cnidaria,Chytridiomycota,Lentisphaerota,Kinorhyncha,Calditrichota,Fornicata,Candidatus Berkelbacteria,Nematoda,Candidatus Woykeibacteriota,Candidatus Aenigmatarchaeota,Mollusca,Candidatus Geothermarchaeota,Candidatus Lithacetigenota,Cercozoa,Thermoproteota,Blastocladiomycota,Candidatus Falkowbacteria,Preaxostyla,Echinodermata,Coprothermobacterota,Candidatus Eiseniibacteriota,Candidatus Adlerbacteria,Candidatus Anderseniibacteriota,Candidatus Calescamantes,Candidatus Hadarchaeota,Candidatus Electryoneota,Thermosulfidibacterota,Candidatus Vogeliibacteriota,Candidatus Glassiibacteriota,Candidatus Thermoplasmatota,candidate division JL-ETNP-Z39,Evosea,Candidatus Wildermuthiibacteriota,Candidatus Dormiibacterota,Thermotogota,Candidatus Kariarchaeota,Gnathostomulida,Candidatus Spechtiibacteriota,Halobacteriota,Nibbleridia,Porifera,Candidatus Buchananiibacteriota,Euryarchaeota,Nebulidia,Candidatus Handelsmaniibacteriota,candidate division WWE3,Olpidiomycota,Synergistota,Candidatus Rifleibacteriota,Candidatus Harrisoniibacteriota,Streptophyta,Myxococcota,Mucoromycota,Candidatus Hodarchaeota,Candidatus Marsarchaeota,Candidatus Tectimicrobiota,Candidatus Hydrogenedentota,Candidatus Terryibacteriota,Candidatus Geoarchaeota,Acidobacteriota,Chaetognatha,Candidatus Roizmanbacteria,Candidatus Blackallbacteria,Candidatus Doudnaibacteriota,Prasinodermophyta,Basidiomycota,Nitrospinota,Nematomorpha,Picozoa,Candidatus Effluviviacota,Nitrospirota,Candidatus Firestoneibacteriota,candidate division ZB2,Candidatus Lloydiibacteriota,Candidatus Pyropristinus,Rhodothermota,Cycliophora,Microsporidia,Bacillota,Dictyoglomota,Candidatus Amesbacteria,candidate phylum NAG2,Sanchytriomycota,Candidatus Edwardsiibacteriota,Oomycota,Candidatus Wolfebacteria,Placozoa,Platyhelminthes,Thermodesulfobiota,Perkinsozoa,Elusimicrobiota,Artverviricota,Dicyemida,Chlamydiota,Candidatus Giovannonibacteria,Kitrinoviricota,Arthropoda,Bdellovibrionota,Candidatus Goldiibacteriota,Candidatus Azambacteria,Candidatus Neomarinimicrobiota,Cressdnaviricota,Candidatus Parcubacteria,candidate division CPR3,Candidatus Lernaellota,Cossaviricota,Candidatus Zambryskiibacteriota,Candidatus Peregrinibacteria,Candidatus Moraniibacteriota,Candidatus Curtissbacteria,Endomyxa,Heterolobosea,Candidatus Kaiserbacteria,Uroviricota,Candidatus Auribacterota,Candidatus Latescibacterota,Candidatus Muiribacteriota,Candidatus Beckwithbacteria,Candidatus Bathyarchaeota,Gemmatimonadota,Candidatus Yanofskyibacteriota,Candidatus Wirthbacteria,Fibrobacterota,Acanthocephala,Candidatus Ryaniibacteriota,Candidatus Undinarchaeota,Candidatus Sigynarchaeota,Thermomicrobiota,Candidatus Walliibacteriota,Balneolota,Microcaldota,Duplornaviricota,Candidatus Brenneribacteriota,Brachiopoda,Candidatus Vebleniibacteriota,Candidatus Borrarchaeota,Candidatus Schekmaniibacteriota,Candidatus Freyarchaeota,Candidatus Zixiibacteriota,Candidatus Odinarchaeota,Vulcanimicrobiota,Thermodesulfobacteriota,Candidatus Gottesmanbacteria,Candidatus Hermodarchaeota,Chrysiogenota,Dividoviricota,Candidatus Tayloriibacteriota,Candidatus Sungiibacteriota,Mycoplasmatota,Candidatus Thorarchaeota,Candidatus Chisholmiibacteriota,Nemertea,Fusobacteriota,Candidatus Nealsoniibacteriota,candidate division CPR2,Hemimastigophora,Candidatus Staskawicziibacteriota,Chordata,Ciliophora,Candidatus Fervidibacterota,Candidatus Korarchaeota,Spirochaetota,Candidatus Methylomirabilota,Candidatus Parvarchaeota,Nitrososphaerota,Candidatus Yonathiibacteriota,Candidatus Delongiibacteriota,Onychophora,Candidatus Omnitrophota,Candidatus Binatota,Candidatus Tharpellota,Priapulida,Candidatus Hydrothermota,Candidatus Baldrarchaeota,Candidatus Paceibacterota,candidate division CSSED10-310,Candidatus Sumerlaeota,Candidatus Desantisbacteria,Candidatus Helarchaeota,Candidatus Kerfeldiibacteriota,Cryptomycota,Chlorophyta,Pisuviricota,Candidatus Gribaldobacteria,Bacteroidota,Candidatus Niyogiibacteriota,candidate division WOR-3,Candidatus Daviesbacteria,candidate division KD3-62,Ascomycota,Parabasalia,Candidatus Bipolaricaulota,Candidatus Portnoyibacteriota,candidate division LCP-89,Candidatus Mcinerneyibacteriota,Candidatus Rokuibacteriota,Candidatus Coatesiibacteriota,Rotifera,Candidatus Jacksoniibacteriota,Gastrotricha,Candidatus Diapherotrites,Hemichordata,Candidatus Nanohalarchaeota,Candidatus Uhrbacteria,Peploviricota,Candidatus Micrarchaeota,candidate division GAL15,Saleviricota,Cyanobacteriota,Candidatus Lokiarchaeota,Candidatus Methanomethylicota,Candidatus Krumholzibacteriota,Phoronida,Candidatus Heimdallarchaeota,Zoopagomycota,Candidatus Woesearchaeota,Orthonectida,Bryozoa,Candidatus Blackburniibacteriota,Candidatus Microgenomates,Candidatus Deferrimicrobiota,Haptophyta,Loricifera,Candidatus Kuenenbacteria,Candidatus Absconditabacteria,Lenarviricota,Candidatus Raymondiibacteriota,Candidatus Cryosericota,Chloroflexota,Candidatus Caldatribacteriota,Candidatus Collierbacteria,Candidatus Liptoniibacteriota,Annelida,Candidatus Jorgensenbacteria,Apicomplexa,Candidatus Cerribacteria,Candidatus Kryptoniota,Actinomycetota,candidate division FCPU426,Candidatus Njordarchaeota,Candidatus Levyibacteriota,Candidatus Gerdarchaeota,Abditibacteriota,Candidatus Moduliflexota,Candidatus Culexarchaeota,Candidatus Colwelliibacteriota,Foraminifera,Candidatus Nezhaarchaeota,Candidatus Poribacteria,Candidatus Nomurabacteria,Candidatus Gefionarchaeota,Deinococcota,Entoprocta,Armatimonadota,Pseudomonadota,Candidatus Hinthialibacterota,Euglenozoa,Candidatus Sifarchaeota,Candidatus Margulisiibacteriota,Candidatus Ratteibacteria,Candidatus Friggarchaeota,Tubulinea,Ctenophora,Campylobacterota,Candidatus Elulimicrobiota,Candidatus Salinosulfoleibacteria,Candidatus Lindowiibacteriota,Taleaviricota,Candidatus Gracilibacteria,Candidatus Aerophobetes,Xenacoelomorpha,Candidatus Saccharibacteria,Candidatus Idunnarchaeota,Tardigrada,Ignavibacteriota,Candidatus Brockarchaeota

src/OGU/data/superkingdoms.csv

@@ -1 +1 @@
-Bacteria,Eukaryota,Viruses,Archaea
+Viruses,Bacteria,Eukaryota,Archaea