Quantifying the combinatoric and evolutionary constrains on microbial diversity using the 16S rRNA sequence.
Clustering random DNA sequences in Mothur.
Estimating the site-specific substitution rate from a 16S rRNA alignment + phylogeny.
Analyzing the secondary structure of 16S rRNA DNA sequences (just data, no Python code at the moment).
Analyzing the tertiary structure of 16S rRNA using Pyrosetta.
Some old code for using Mothur. Keeping it in here and out of the way until I sort it out.