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57.5.0
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@dozy dozy released this 04 Nov 13:55
· 911 commits to master since this release
57.5.0
0fc8494
  • add BWA MEM2 support to seq_alignment function
  • bug fix: add -f to rm command removing intermediate files (to avoid error when no intermediate files are present)
  • allow selection of duplicate marking method (biobambam,samtools or picard) in seq_alignment via product_release.yml
  • detect flowcell type and set uses_patterned_flowcell attribute to allow setting of optical duplicate region size
  • add ability to select bwakit postalt processing (if reference has alternate haplotypes) in seq_alignment via product_release.yml
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