Workflows for germline short variant discovery with GATK4

Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline

Workflows for data pre-processing and initial calling of somatic SNP, Indel, and copy number variants optimized by Intel for on-premises infrastructure

Workflow to run bam-qc-metrics (https://github.com/oicr-gsi/bam-qc-metrics)