Generate high quality, publication ready visualizations for single cell transcriptomics data.

This is a RNAseq workflow.

📊 An R package of RNA-seq workflow

A repository for setting up a RNAseq workflow

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

plotthis is an R package that is built upon ggplot2 and other plotting packages.

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.

The Bulk RNAseq workflow base on WDL using Hisat2+stringtie+DeSeq2