fixed wget command

xloctran · Jul 14, 2021 · 6588892 · 6588892
1 parent 4210579
commit 6588892
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/11_mprt/fetch_fasta.sh b/11_mprt/fetch_fasta.sh
@@ -11,9 +11,10 @@ OUT_DIR="fasta"
 
 while read -r PROT_ID; do
     echo "$PROT_ID"
-    URL="https://www.uniprot.org/uniprot/${PROT_ID}"
+    URL="http://www.uniprot.org/uniprot/${PROT_ID}.fasta"
+    echo $URL
     OUT_FILE="$OUT_DIR/${PROT_ID}.fasta" 
-    wget -q -o "$OUT_FILE" "$URL"
+    wget -q -O "$OUT_FILE" "$URL"
 done < $1
 
 echo "Done, see output in \"$OUT_DIR\"."