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1. xmkbio-wzc xmkbio-wzc Public

   Config files for my GitHub profile.

2. TBProfiler TBProfiler Public

   Forked from jodyphelan/TBProfiler

   Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

   Python

3. tbdb tbdb Public

   Forked from jodyphelan/tbdb

   Standard database for the TBProfiler tool

   Python

4. dna-seq-gatk-variant-calling dna-seq-gatk-variant-calling Public template

   Forked from snakemake-workflows/dna-seq-gatk-variant-calling

   This Snakemake pipeline implements the GATK best-practices workflow

   Python

5. rna-seq-kallisto-sleuth rna-seq-kallisto-sleuth Public template

   Forked from snakemake-workflows/rna-seq-kallisto-sleuth

   A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.

   R

6. gentb-snakemake gentb-snakemake Public

   Forked from farhat-lab/gentb-snakemake

   From FASTQ file to antibiotic resistance prediction using RandomForest - the GenTB pipeline wrapped in snakemake

   HTML