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rrwick

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Commits on Jul 31, 2020

• Add mention of Trycycler

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Commits on Jul 20, 2020

• Don't allow too-new versions of SPAdes

  rrwick

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Commits on Mar 3, 2020

• Add a maximum size for simple loops

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• Change group for --no_long_read_alignment option

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Commits on Feb 17, 2020

• Add --no_long_read_alignment option

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Commits on Oct 21, 2019

• Explicitly set Phred offset to avoid SPAdes error

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Commits on Aug 16, 2019

• Decrease Racon polish rounds

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• Fix typos

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  aa6e4ba

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Commits on Dec 12, 2018

• Include read depth filter info in output/log

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Commits on Nov 27, 2018

• New option: --largest_component

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Commits on Sep 5, 2018

• Merge pull request rrwick#136 from sjackman/no-fix-local

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• Version bump

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  2621c37

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Commits on Jul 2, 2018

• Merge branch 'master' into development

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• Add tip regarding --existing_long_read_assembly

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Commits on May 28, 2018

• Merge pull request rrwick#88 from ksnavely/support-ubuntu-java

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• Merge pull request rrwick#109 from edawine/development

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  9a18bf9

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• Fix crash with --kmer_count 1

  rrwick

  committed
  e609656

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• Support custom SPAdes builds with a larger max k-mer

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  742db3b

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• Catch possible crash when cleaning up Pilon files

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  078a782

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• Version bump

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  4cdba62

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• Support new version of Racon

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  434cead

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• Ignore coverage file

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  4e3fb88

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• Fix test failure at certain terminal widths

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  67c1382

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Commits on Apr 17, 2018

• Improved SPAdes graph cleaning

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Commits on Apr 10, 2018

• Increase version number

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  22cee71

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• Fix unittests for help text formatting

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Commits on Apr 9, 2018

• Use only 10 longest contigs when performing depth filter

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Commits on Apr 8, 2018

• Use only 10 longest contigs when normalising graph depth

  rrwick

  committed
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• Use only 10 longest contigs when estimating single-copy depth

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Commits on Jan 31, 2018

• Add ANSI formatting to help

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• Add new option: --spades_tmp_dir

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Commits on Jan 24, 2018

• Stand-alone Pilon script

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Commits on Jan 23, 2018

• New option to specify exact k-mer sizes

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Commits on Jan 14, 2018

• Merge pull request rrwick#77 from kblin/setup-toolcheck

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Commits on Jan 12, 2018

• New --min_anchor_seg_len option

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